Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2333 ATGAACAACAACAGCAACAGCAACAGAAAAGATAATGAACTTGTTGGAAAAAGAACAAGGTTCATCATGAACAACAACAACAACAACGGGGTTTCTGATGATGATATCACTGTTCCATCATTACTCCATCAACAACAACAATCATCTCTCATGTCGTCTCATCAGGTTCAACAGCAGCAGCAGCATCAATCTTCTCCTTTTAACCCTCAACCTCAAGGAGGGTTTCCTATTTGGGGTGATGAAACAATGATCAACAATAACAACAGTAACAATAACTGGAATCATCATGATCATCATCAATTGTCTGTTGATCTTTCTGCAATGACCATTTTGGATGAAGATCATCATCAACCTAACAACAACAACAACAACATTACTAGAATCAGAGGTAATAACAATCTTACTGACTCAATCACAAACATGAGCATGAACATGCCTCCTTTTTGGGAATCTCATGCATACAACAACAACAACAACAGCAATAACAACAACATTGTTGAAGATGAAACTGTAACAGTAACAGGAACATACCCACGTTATCAAAACATGGGTACTCCAAAATCAACTTTTGGCGTTTCACCTTCACAAGGTTTAGTCTCTGATATGAAATGGGGTATGCAAAAAGGTCACGCCTTTGGTGGAGTTTCCCAAATGGGTTCTTCCATTGATCTTGGAAACAATGTTTCTTATGGTCATGGTCAAGGACATGCTGGACTTGGACATGGACTTTGTTATGGACATGGTAGAGGTAGAGTTGTTCCGGTTCAACTTCAAAACCCATCTTTCTATTCATCTTATAACCCTTATGAACAACGTCCTACTGTGTATCCTTCACCAAGAGGATCTTCTTTTGTTATGGAAAATGATTTAGGATGGGATGTTGCAACAAATAATCCTATCATGTACACTACTCCAAATGTAAACAATGCTGCAGCAGCAGCACCACCACCACCACCTCCTTCACCACAACAACTTTATTATCCTTCTAATAGGTATTTTCAACTTCCTCAATCTCTTTATCCTACTAGACCTATTGAGGAACCTGTGGCTTTTAAATGTGATAGTAGTTTTATCTTTCAAGAGAATGACATGAAGAATGAGTGCAATAACTCATCATTGTTGGGTGGTGCTAGAAAGTATCCATACTCACAAGAGGGAGTGATTCCTCAAATTTCTCATTTTCCTTGTAAAATTGAAAACAGTAGAAATTTTGTAACTGATAACGATGATGATGATCATGATGATGATGGTTATGATGATGTACAACAAAATTTGATGAATTTTGGTACTTCTAGTTTTCCTGAGCTACAAAGTTATATGCTTCATATGGCAAAGGATCAGAATGGTGGTCGTTTTCTGCAGGGGTTGGTTGAGAAAGGGAGAGTTGAAGATATGGAAGTGGTGTTTAATGGAGTTATTGATAATGTTGTTGAGCTTATGATGGACCCTTTTGGGAATTATCTTGTGCAGAAATTGCTTGAGTTTTGTAGGGATGAACAAAGGTTGCAAATTGTTCTTATGTTGACTAAAGAACCTGGTCAGCTAGTCAGAACCTCTTTTAACACACATGGCACAAGAGTGGTTCAGAAGCTGATTTCTACTCTCAAATCAAGGAGGCAAATTGCATTAGTGAGGTCTGCAATTCAACCTAGTTTTCTTGATCTAGTTAAGGATCTGAATGGAAATCATGTCATACAACGCTGCTTGTCATCTTGGAGTGTTCAAGATAATGAGTTTATTTTTGATGCTGCAATAAAGTTCTTACTTGATGTTGCTACTCATCAACATGGCTGCTGTGTGCTTCAACGCTGCATTGATTTCTCAAAGGGGAAAAGTTTAGAAAAGCTTGTCAAAGAAATTTGCAAATATGGCTTTTCCCTAGCTCAAGATCCATATGGTAACTATGTTGTTCAGTACATTATCCAGATGCAAATTCCAAGTGCCATAGCCAAACTTACTCCTCAGTTCAAAGGGAACTATGTACTCCTCTCCACACAAAAATTTAGCAGCCATGTGGTTGAAAAGTGCCTCGAATTTATTGTAGAGGCTAGAGCAAGGATTGTACAAGAATTGCTTTCTGTTCCTCAATTTGAGCGTCTGCTGCAAGACCCTTATGGCAACTATGTCGTTCAACGTGCTCTCGAATTCACCAAGGGCTCTTTGCATGCATCATTGGTTGAAGCAGTTAGAGCCCACAAAATGTTGCGTACAAGCCCATATTGCAAGAGGATTTTCTCAAAAACTCAGTTTAAGAAGTGA 2259 0.3847 MNNNSNSNRKDNELVGKRTRFIMNNNNNNGVSDDDITVPSLLHQQQQSSLMSSHQVQQQQQHQSSPFNPQPQGGFPIWGDETMINNNNSNNNWNHHDHHQLSVDLSAMTILDEDHHQPNNNNNNITRIRGNNNLTDSITNMSMNMPPFWESHAYNNNNNSNNNNIVEDETVTVTGTYPRYQNMGTPKSTFGVSPSQGLVSDMKWGMQKGHAFGGVSQMGSSIDLGNNVSYGHGQGHAGLGHGLCYGHGRGRVVPVQLQNPSFYSSYNPYEQRPTVYPSPRGSSFVMENDLGWDVATNNPIMYTTPNVNNAAAAAPPPPPPSPQQLYYPSNRYFQLPQSLYPTRPIEEPVAFKCDSSFIFQENDMKNECNNSSLLGGARKYPYSQEGVIPQISHFPCKIENSRNFVTDNDDDDHDDDGYDDVQQNLMNFGTSSFPELQSYMLHMAKDQNGGRFLQGLVEKGRVEDMEVVFNGVIDNVVELMMDPFGNYLVQKLLEFCRDEQRLQIVLMLTKEPGQLVRTSFNTHGTRVVQKLISTLKSRRQIALVRSAIQPSFLDLVKDLNGNHVIQRCLSSWSVQDNEFIFDAAIKFLLDVATHQHGCCVLQRCIDFSKGKSLEKLVKEICKYGFSLAQDPYGNYVVQYIIQMQIPSAIAKLTPQFKGNYVLLSTQKFSSHVVEKCLEFIVEARARIVQELLSVPQFERLLQDPYGNYVVQRALEFTKGSLHASLVEAVRAHKMLRTSPYCKRIFSKTQFKK* 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2333 752 Pfam Pumilio-family RNA binding repeat 475 505 IPR001313 GO:0003723
Tpr2g2333 752 Pfam Pumilio-family RNA binding repeat 517 535 IPR001313 GO:0003723
Tpr2g2333 752 Pfam Pumilio-family RNA binding repeat 702 719 IPR001313 GO:0003723
Tpr2g2333 752 Pfam Pumilio-family RNA binding repeat 659 692 IPR001313 GO:0003723
Tpr2g2333 752 Pfam Pumilio-family RNA binding repeat 626 641 IPR001313 GO:0003723
Tpr2g2333 752 Pfam Pumilio-family RNA binding repeat 589 621 IPR001313 GO:0003723
Tpr2g2333 752 Pfam Pumilio-family RNA binding repeat 552 582 IPR001313 GO:0003723
Tpr2g2333 752 Pfam Pumilio-family RNA binding repeat 440 470 IPR001313 GO:0003723
Tpr2g2333 752 ProSiteProfiles Pumilio RNA-binding repeat profile. 510 545 IPR001313 GO:0003723
Tpr2g2333 752 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 413 752 IPR033133 GO:0003723
Tpr2g2333 752 Gene3D - 419 751 IPR011989 -
Tpr2g2333 752 PANTHER PUMILIO-FAMILY RNA-BINDING REPEATPROTEIN 23 752 - -
Tpr2g2333 752 ProSiteProfiles Pumilio RNA-binding repeat profile. 435 470 IPR001313 GO:0003723
Tpr2g2333 752 MobiDBLite consensus disorder prediction 43 69 - -
Tpr2g2333 752 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 23 752 - -
Tpr2g2333 752 ProSiteProfiles Pumilio RNA-binding repeat profile. 583 618 IPR001313 GO:0003723
Tpr2g2333 752 ProSiteProfiles Pumilio RNA-binding repeat profile. 690 727 IPR001313 GO:0003723
Tpr2g2333 752 ProSiteProfiles Pumilio RNA-binding repeat profile. 619 654 IPR001313 GO:0003723
Tpr2g2333 752 SMART pum_5 583 618 IPR001313 GO:0003723
Tpr2g2333 752 SMART pum_5 692 727 IPR001313 GO:0003723
Tpr2g2333 752 SMART pum_5 619 654 IPR001313 GO:0003723
Tpr2g2333 752 SMART pum_5 510 545 IPR001313 GO:0003723
Tpr2g2333 752 SMART pum_5 655 689 IPR001313 GO:0003723
Tpr2g2333 752 SMART pum_5 435 470 IPR001313 GO:0003723
Tpr2g2333 752 SMART pum_5 471 506 IPR001313 GO:0003723
Tpr2g2333 752 SMART pum_5 547 582 IPR001313 GO:0003723
Tpr2g2333 752 SUPERFAMILY ARM repeat 430 748 IPR016024 -
Tpr2g2333 752 CDD Pumilio 443 747 IPR033712 GO:0003723
Tpr2g2333 752 ProSiteProfiles Pumilio RNA-binding repeat profile. 471 507 IPR001313 GO:0003723
Tpr2g2333 752 ProSiteProfiles Pumilio RNA-binding repeat profile. 547 582 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2333 Tpr-Chr2 28126848 28130774 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g2333 - - mtr:MTR_5g063650 999.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g2333 2 28126848 28130774 Tpr2g2333 2 28126848 28130774 ECH