Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1916 ATGAAGAATAGTGACATAACAGTAACAAAACTAGTAGCAAATGGATTATACAAACAAGCCCTTCAATTCTATTCCAAACTCCACTCTTCTTCCCACACTCCTAACTCATTCACATTCCCCATTCTCCTCAAAGCATGTTCCAATCTCTCTTATAATTCACCTTCCCAAACTCAAATCCTCCATGCCCATCTCTTCAAAACCGGTTTCCATTCCCACCCTCATACCTCCACTGCCCTCACCGCCTCCTATGCAGCCAATTCTCGCTCTTTCCCGGATGCATTCAAACTGTTTGATGAAATGCCTCAACCAACTATCACTGCCTTCAATGCTGTACTTTCTGGACTCTCGTGGAACGGGTCTCGTGGTGAAGCTATTGGGCTTTTTCATAAAATTGGGCTTTGGAATCTTAGGCCCAATTCTGTCACCATTGCGTCGATGCTCGCTACAGGTGATATAAAAGATCAAAGTCATGTGCAGCAGGTTCATTGCTTGGCGCACAAGTTAGGAGTTGAATCTGATGTTTATGTTTCCACTTCGCTTGTTACTGGTTATTCGAAATGTGGAGGTTTGATTTCGTCGAATAAGGTTTTTGAAAATTTGCAGGTGAAAAATGTTGTTACTTACAATGCTTTTATGTCGGGGTTGTTGCAAAACGGGTTTCCTCGTCTTGTTTTTTATGTTTTTAAGGATATGATGATGAGATTGGAGCAAAAACCGAATATGGTGACTTTGGTGTCTGTTATTTCAGCATGTGCTACCCTTTTGAACATTCATTTGGGGAAGCAGGTTCATGGGCTTAGCATGAAAATGGAAGCTTGTGATCATGTTATGGTGGTAACTTCACTTGTGGACATGTATTCAAAGTGTGGTTGTTGGGGTTTTGCTTTTGATGTTTTTAATGAAAGTAAAACGAGGAACTTGATCACTTGGAACTCTATGATTGCTGGGATGATTATGAATTCAGAGAGTGAGAGGGCTGTGGAAGTGTTTGAGAGGATGATTGATGAAGGGGTTTTGCCTGATCCAGCAACTTGGAACTCTTTGATTGGTGGGTTTGCTCAAAAAGGGGTGTGTGTGGAAGCTTTTAAGTACTTTAGGAAAATGTTGTGTGCTGGTGTGGCTCCATGTTTGAAGATTGTGACTAGTCTTTTGTCTGCGTGTGCTGATTCATCTTTGTTGCAAAGTGGGAAAGAGATACATGGGTATGCTTTGAGAATTTGTGTTAACAAAGATGATTTTTTTGCAACTGCTTTGGTTGATATGTATATGAAATGTGGGTGTGTTTCTTTGGCACGTTTTGTTTTTGATCAGTTTGAAGCAAAACCAGCTGATCCTGCATTTTGGAATGCAATGATAGGAGGGTATGGAAGGAATGGAGATTATGAGTCTGCTTTTGAAATCTATGATGAAATGTTGGCTGAAATGGTTCAACCGAATGGTGTAACATTTGTTAGTGTTCTTTCGGCTTGTAGCCACAGTGGTCAAGTTGAGAGAGGATTACATGTTTTCAAAATGATAAGAGAGTATGGTTTGGATCCGAAGCCTGAGCATTTTGGTTGTGTTGTTGACCTTTTGGGTCGATCTGGTCGGTTGGAAGAAGCTCGAGATTTGGTGCATGAATTAGCAGAACCTCCTGCATCTGTTTTTGATTCTTTGCTTGGTGCATGTAGGTGCTACCTAGATTCTAATCTTGGAGAAGAAATGGCCATGAAGCTTCTCGACATGGAACCGGAAAATCCAGCTCCCCTGGTGGTTTTGTCCAACATATATGCAGCGTTGGGAAGATGGAGAGAAGTAGAAAGGATAAGAGGCTTGATCACAGATAAAGGATTGGACAAACTTTCTGCTGTTAGCATGATAGAAGTTGCATGA 1872 0.4129 MKNSDITVTKLVANGLYKQALQFYSKLHSSSHTPNSFTFPILLKACSNLSYNSPSQTQILHAHLFKTGFHSHPHTSTALTASYAANSRSFPDAFKLFDEMPQPTITAFNAVLSGLSWNGSRGEAIGLFHKIGLWNLRPNSVTIASMLATGDIKDQSHVQQVHCLAHKLGVESDVYVSTSLVTGYSKCGGLISSNKVFENLQVKNVVTYNAFMSGLLQNGFPRLVFYVFKDMMMRLEQKPNMVTLVSVISACATLLNIHLGKQVHGLSMKMEACDHVMVVTSLVDMYSKCGCWGFAFDVFNESKTRNLITWNSMIAGMIMNSESERAVEVFERMIDEGVLPDPATWNSLIGGFAQKGVCVEAFKYFRKMLCAGVAPCLKIVTSLLSACADSSLLQSGKEIHGYALRICVNKDDFFATALVDMYMKCGCVSLARFVFDQFEAKPADPAFWNAMIGGYGRNGDYESAFEIYDEMLAEMVQPNGVTFVSVLSACSHSGQVERGLHVFKMIREYGLDPKPEHFGCVVDLLGRSGRLEEARDLVHELAEPPASVFDSLLGACRCYLDSNLGEEMAMKLLDMEPENPAPLVVLSNIYAALGRWREVERIRGLITDKGLDKLSAVSMIEVA* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1916 623 Pfam PPR repeat 518 541 IPR002885 -
Tpr2g1916 623 Pfam PPR repeat 107 130 IPR002885 -
Tpr2g1916 623 TIGRFAM PPR: pentatricopeptide repeat domain 308 341 IPR002885 -
Tpr2g1916 623 TIGRFAM PPR: pentatricopeptide repeat domain 344 375 IPR002885 -
Tpr2g1916 623 TIGRFAM PPR: pentatricopeptide repeat domain 448 478 IPR002885 -
Tpr2g1916 623 TIGRFAM PPR: pentatricopeptide repeat domain 481 513 IPR002885 -
Tpr2g1916 623 TIGRFAM PPR: pentatricopeptide repeat domain 206 234 IPR002885 -
Tpr2g1916 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Tpr2g1916 623 Gene3D Tetratricopeptide repeat domain 494 622 IPR011990 GO:0005515
Tpr2g1916 623 Gene3D Tetratricopeptide repeat domain 153 259 IPR011990 GO:0005515
Tpr2g1916 623 Gene3D Tetratricopeptide repeat domain 403 493 IPR011990 GO:0005515
Tpr2g1916 623 Gene3D Tetratricopeptide repeat domain 266 402 IPR011990 GO:0005515
Tpr2g1916 623 Gene3D Tetratricopeptide repeat domain 5 152 IPR011990 GO:0005515
Tpr2g1916 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 239 IPR002885 -
Tpr2g1916 623 Pfam E motif 559 621 IPR046848 -
Tpr2g1916 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 479 513 IPR002885 -
Tpr2g1916 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 375 IPR002885 -
Tpr2g1916 623 PANTHER OS07G0578800 PROTEIN-RELATED 9 618 IPR045215 GO:0003723|GO:0009451
Tpr2g1916 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 444 478 IPR002885 -
Tpr2g1916 623 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 9 618 - -
Tpr2g1916 623 Pfam PPR repeat family 203 252 IPR002885 -
Tpr2g1916 623 Pfam PPR repeat family 447 491 IPR002885 -
Tpr2g1916 623 Pfam PPR repeat family 306 353 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1916 Tpr-Chr2 22871627 22873498 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1916 14 623 Glycoside Hydrolase AT3G49170 27.832 5.34e-75 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1916 - - gmx:100809263 863.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1916 2 22871627 22873498 Tpr2g1916 2 22871627 22873498 ECH