Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1840 ATGGCTCTATCACGTTTAGCGTCATCTTCAACCGTCGGATCCAATCTCGTCAAACCAATCTCCGCCGCCATATCTCTTCACCGTCCGATCTCCTCCGACGCAACCACCACACTCACAATCGAAACATCCCTCCCTTTCACCGCCCACAATTGCTCACCACCGTCCACCTCCGTCACCACAACCCCCTCCGAACTCCTCTCCTTCTTCCGCACCATGGCCTTAATGCGTCGAATGGAAATCGCCGCCGATTCACTCTACAAATCAAAACTCATCCGCGGTTTCTGCCACCTCTACGACGGCCAAGAAGCCGTCGCGGTCGGTATGGAAGCATCAACAACTAAAAAAGACTGTATAATTACTGCTTACCGTGATCACTGTACTTTTCTCGGCCGCGGCGGAACCCTACTTGAGGTTTATTCTGAACTTATGGGAAGAATTGATGGGTGTTCTAAAGGGAAAGGTGGTTCAATGCATTTTTATAAGAAAGATTCTGGGTTTTATGGGGGTCATGGAATTGTTGGTGCTCAAGTTCCACTTGGTTGTGGTTTAGCTTTTGGTCAGAAATATTTGAAAGATGAAAGTGTTACGTTTGCTTTGTATGGTGATGGTGCTGCTAATCAGGGGCAACTTTTTGAAGCTCTTAATATTGCTGCTCTTTGGGATCTTCCTGCGATTTTGGTTTGTGAGAATAATCATTATGGAATGGGGACTGCTGAATGGAGAGCTGCTAAGAGTCCTGCTTATTACAAGAGAGGAGATTATGTTCCTGGATTGAAGGTAGATGGCATGGATGTTCTTGCTGTGAAACAAGCTGTTAAATTTGCAAAGGAGCATGCTTTGCAGAATGGGCCCCTTATTCTTGAAATGGACACTTACAGATACCATGGTCACTCAATGTCTGATCCTGGAAGCACATACCGAACACGTGATGAAATTTCTGGTGTGAGACAGGAGCGTGACCCAATTGAGAGAGTAAGAAAGCTGTTACTGTCTCATGACATTGCTACCGAAAAGGAGCTAAAGGACACTGAAAAAGAAGTCAGAAAAGAAGTTGATGAAGCTATTGCTAAAGCAAAGGAGAGTCCAGTGCCAGAACCGTCTGATCTATTTAGCAATGTATATGCTAAAGGATACGGAGTTGAGGCATTTGGCGCTGATAGGAAAGAATTAAGAGCTACTTTGCCATAA 1188 0.452 MALSRLASSSTVGSNLVKPISAAISLHRPISSDATTTLTIETSLPFTAHNCSPPSTSVTTTPSELLSFFRTMALMRRMEIAADSLYKSKLIRGFCHLYDGQEAVAVGMEASTTKKDCIITAYRDHCTFLGRGGTLLEVYSELMGRIDGCSKGKGGSMHFYKKDSGFYGGHGIVGAQVPLGCGLAFGQKYLKDESVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLKVDGMDVLAVKQAVKFAKEHALQNGPLILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLSHDIATEKELKDTEKEVRKEVDEAIAKAKESPVPEPSDLFSNVYAKGYGVEAFGADRKELRATLP* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1840 395 CDD TPP_E1_PDC_ADC_BCADC 68 358 - -
Tpr2g1840 395 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR 14 395 - -
Tpr2g1840 395 Coils Coil 337 357 - -
Tpr2g1840 395 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA, MITOCHONDRIAL 14 395 - -
Tpr2g1840 395 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 59 376 IPR029061 -
Tpr2g1840 395 TIGRFAM PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 63 375 IPR017597 GO:0004739|GO:0006086|GO:0043231
Tpr2g1840 395 Pfam Dehydrogenase E1 component 71 366 IPR001017 GO:0016624
Tpr2g1840 395 Gene3D - 26 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1840 Tpr-Chr2 21877061 21882419 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1840 1 395 Acyl Lipid Metabolism Gene Families AT1G24180 77.834 0.0 655
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1840 K00161 - cit:102613187 690.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1840 2 21877061 21882419 Tpr2g1840 2 21877061 21882419 ECH