Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1721 ATGAGTGGTTTAACCTTAAAAGGCTTCACATATATGCTTCTAATTGCATTTCTAATTTGGTCTTCTAATTTTGAGTGCTGCATTGCAAGAAGAGGTAAGCATTGGAGAAACACAAGAACTTTTTCATCTTCTTTGTTTAAGAAAAAAGGAAAGAGTTACAATGGAAATAGTCATAATAAAAATCACCACCATAGTGGAGGATCAAATTCAAAACCAAAGTCTTCACCACCATCACATAAAAGCACTCCACCACCATTATCACCAAAAGCTCCTCCACAACATAAAAGTGTTCCAATATCTCCACCAATTTCTAAACCAAAATATTCTCCTTCAATTCCACCACCAAAAGGTAACAATGGAGAGCATTCAACTTTCTTCAATGTGTTAGATTATGGAGCTAAAGGAGATGGTAACACTGATGATACTAAGGCATTTCAAGCAACATGGGCAGCTGCATGTAAAGTAGAAGCATCAACAATGGTGGTTCCAGCAGATTACATCTTCTATGTGGGCCCTATTTCATTCTCTGGCCCATATTGTAAGCCCAATATTGTTTTTCAGCTTGATGGTACAATTATTGCACCAACAAACCCAAATGCTTGGAGTGGAGTAACACTACAGTGGCTGGAATTCACAAAACTAGAAAAAATTACCATTCAAGGAAATGGGGTCATTGATGGAAAAGGCTCAGTTTGGTGGCAAGATTTTCCATATGATAATCCAATAGATGATGAAGAAAAGCTTATAGTTCCTTTAAATCACACTCAGAAGCCTCCAATGCCGGTACAAAATGAGATGGGAAGAAAAATGCCAAGCAACAAGCCAACTGCACTAAGGTTTTATGGGAGTTATAGTCCAACTGTGACAGGCATAACAATTCAAAATAGTCCACAGTGTCACCTAAAGTTTGATAATTGCAATGGAGTCCTTGTTCATGATGTGACCATTTCATCTCCTGGTGATAGCCCTAACACTGATGGAATTCATCTTCAGAATTCCAAAGATGTTTTGATTCGCAACAGCAAGTTAGCATGTGGAGATGATTGTATTTCTATACAAACTGGGTGCTCGGATGTGTATGTACACAATGTGAACTGTGGTCCAGGACATGGAATCAGCATTGGAAGTTTAGGAAAAGATAACACTAGAGCTTGTGTCTCAAACATTACTGTCAGAGATGTCAACATTCATGACTCAATGAATGGTGTTAGAATCAAAACATGGCAGGGTGGATCTGGTTCAGTACAAGGAGTACTATTCTCAAACATACAAGTTACAGAAGTTCAACTTCCCATTGTGATTGATCAATTTTACTGTGACAAAAGAACATGCACAAATCAAACTTCAGCGGTGTCTCTAGCAGGAATCAACTACGAAAGAATAAAGGGAACATACACAGTTAAACCAGTACACTTTGCTTGCAGCGATAACTTGCCTTGTGTAGATGTTTCTTTAACCTCTGTCGAGTTAAAACCAATTCAAGAAAAATATCATTTATATGATCCATTCTGTTGGCAGACTTTCGGTGAATTAAGAACTCCAACAGTCCCACCAATTGGTTGTTTACAGATTGGGAAGCCGCCTAACAATCGAATTCAGACCGATCATGATATATGCTGA 1620 0.3821 MSGLTLKGFTYMLLIAFLIWSSNFECCIARRGKHWRNTRTFSSSLFKKKGKSYNGNSHNKNHHHSGGSNSKPKSSPPSHKSTPPPLSPKAPPQHKSVPISPPISKPKYSPSIPPPKGNNGEHSTFFNVLDYGAKGDGNTDDTKAFQATWAAACKVEASTMVVPADYIFYVGPISFSGPYCKPNIVFQLDGTIIAPTNPNAWSGVTLQWLEFTKLEKITIQGNGVIDGKGSVWWQDFPYDNPIDDEEKLIVPLNHTQKPPMPVQNEMGRKMPSNKPTALRFYGSYSPTVTGITIQNSPQCHLKFDNCNGVLVHDVTISSPGDSPNTDGIHLQNSKDVLIRNSKLACGDDCISIQTGCSDVYVHNVNCGPGHGISIGSLGKDNTRACVSNITVRDVNIHDSMNGVRIKTWQGGSGSVQGVLFSNIQVTEVQLPIVIDQFYCDKRTCTNQTSAVSLAGINYERIKGTYTVKPVHFACSDNLPCVDVSLTSVELKPIQEKYHLYDPFCWQTFGELRTPTVPPIGCLQIGKPPNNRIQTDHDIC* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1721 539 MobiDBLite consensus disorder prediction 77 113 - -
Tpr2g1721 539 ProSitePatterns Polygalacturonase active site. 363 376 IPR000743 GO:0004650|GO:0005975
Tpr2g1721 539 SUPERFAMILY Pectin lyase-like 123 537 IPR011050 -
Tpr2g1721 539 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 6 529 - -
Tpr2g1721 539 Pfam Glycosyl hydrolases family 28 272 491 IPR000743 GO:0004650|GO:0005975
Tpr2g1721 539 Pfam Glycosyl hydrolases family 28 155 235 IPR000743 GO:0004650|GO:0005975
Tpr2g1721 539 Gene3D - 116 519 IPR012334 -
Tpr2g1721 539 SMART pbh1 386 407 IPR006626 -
Tpr2g1721 539 SMART pbh1 333 354 IPR006626 -
Tpr2g1721 539 SMART pbh1 306 332 IPR006626 -
Tpr2g1721 539 SMART pbh1 214 235 IPR006626 -
Tpr2g1721 539 SMART pbh1 415 436 IPR006626 -
Tpr2g1721 539 SMART pbh1 356 376 IPR006626 -
Tpr2g1721 539 MobiDBLite consensus disorder prediction 46 119 - -
Tpr2g1721 539 MobiDBLite consensus disorder prediction 59 76 - -
Tpr2g1721 539 PANTHER - 6 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1721 Tpr-Chr2 20369220 20375081 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1721 4 539 Glycoside Hydrolase AT1G60590 64.564 0.0 689
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1721 - - gmx:732602 852.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1721 2 20369220 20375081 Tpr2g1721 2 20369220 20375081 ECH