Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1689 ATGAAGCAAAACAAAAGTTTTTCTCAACTCTTTTTCATGTCCTTATTAATGCTTATGGTTTATGTGGATGCAAGGAAGACTAACATGAAGAAAAAACTTCACAAACATCCCAAAGAATCACATCCTCTTCCTCATTTTGATCCTCATCCAACACAACTAAACACTTTTGATGTTATGTCTTTTGGTGCAAAAGGCAATGGCGTTTCTGATGATTCAGAGGCATTTCTAGCTGCATGGAAATGTGCATGCAAAGTTTCTGGTGCAACAATCAAAGTTCCAGCAAAATTCAACTTCCTCATTAAGCCTATTACTTTACAAGGCCCTTGTATGCCTGATCTTACACTTCAGATAGATGGAACAATATTGGCTCCTTCAGAAGTATCTTCATGGCCAAAATCCAGTTTGTTTCAGTGGATAAATTTCAAATGGTTGCAGAACTTTACTATCAAAGGTTATGGCACTATTAATGGTCAAGGCTCTAATTGGTGGACCTCCTCAGAACTTTATGATATACAGGTAAAAAAAAAAACTCACTCTAAGCAAATTCCAAGCATGAAGCCAACCGCTATAAGATTCTACTCTAGCAACCTTATAAAGATTATAGATATCAAAATCATAAACAGTCCTCTATGTCATCTTAAATTTGACAATTCAAAGGGAATCAAAGTTGATAATATTACAATATCTTCCCCTGAAAATAGCCCAAACACTGATGGAATTCACTTGCAAAACACACATGATGTAGAAATTCAACATTCTAATATTGGAACTGGAGATGACTGTGTGTCCATCCAAACTGGTTGTTCTAATATTCATGTCCACCACATTAAATGTGGCCCTGGTCATGGCATAAGTTTAGGAGGATTAGGAAAAGACAAGAGTGTGGCATGCGTATCTGACATCATTGTTGAGGACATTTCTATGAAAAATACTCTGTATGGAGCAAGGATCAAAACATGGCAGGGAGGCAATGGTATGGTAAAAAATGTAACATTTTCAAGAATTAAAGTGTATGATGTTATGTTTCCAATAATGATAGACCAATACTATTGTGACAAACAAATCTGCAAGAACCAAACAGGAACAGTGGTAATTTCTGGTGTTAAATTTGATCAAATAAGTGGTAGTTATTCAGTGCAGCCAGTCCACCTAGCTTGCAGCAATTCCATACCATGTACAGATGTTGATTTAACTGACATTCAGTTAAGGCCTTCCCTTAAATATAGAGGTTACCAACAAGCTATGTGTTGGAATTCTTATGGAAAATCACAAGGTCAATTGGTACCTTCAAGTATTGATTATTGTTTGAGAAGTGGTGGTGGATTAATAAAGAAGATAGCAAAGTCACATGATAGTGTGTGTTATAAATTGTTTTAA 1377 0.3573 MKQNKSFSQLFFMSLLMLMVYVDARKTNMKKKLHKHPKESHPLPHFDPHPTQLNTFDVMSFGAKGNGVSDDSEAFLAAWKCACKVSGATIKVPAKFNFLIKPITLQGPCMPDLTLQIDGTILAPSEVSSWPKSSLFQWINFKWLQNFTIKGYGTINGQGSNWWTSSELYDIQVKKKTHSKQIPSMKPTAIRFYSSNLIKIIDIKIINSPLCHLKFDNSKGIKVDNITISSPENSPNTDGIHLQNTHDVEIQHSNIGTGDDCVSIQTGCSNIHVHHIKCGPGHGISLGGLGKDKSVACVSDIIVEDISMKNTLYGARIKTWQGGNGMVKNVTFSRIKVYDVMFPIMIDQYYCDKQICKNQTGTVVISGVKFDQISGSYSVQPVHLACSNSIPCTDVDLTDIQLRPSLKYRGYQQAMCWNSYGKSQGQLVPSSIDYCLRSGGGLIKKIAKSHDSVCYKLF* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1689 458 SMART pbh1 218 244 IPR006626 -
Tpr2g1689 458 SMART pbh1 245 266 IPR006626 -
Tpr2g1689 458 SMART pbh1 327 348 IPR006626 -
Tpr2g1689 458 SMART pbh1 268 288 IPR006626 -
Tpr2g1689 458 SMART pbh1 298 319 IPR006626 -
Tpr2g1689 458 Pfam Glycosyl hydrolases family 28 88 405 IPR000743 GO:0004650|GO:0005975
Tpr2g1689 458 Gene3D - 48 440 IPR012334 -
Tpr2g1689 458 PANTHER - 13 443 - -
Tpr2g1689 458 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 13 443 - -
Tpr2g1689 458 SUPERFAMILY Pectin lyase-like 52 432 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1689 Tpr-Chr2 20029851 20033914 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1689 10 454 Glycoside Hydrolase AT3G26610 60.917 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1689 K01213 - gmx:100803027 731.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1689 2 20029851 20033914 Tpr2g1689 2 20029851 20033914 ECH