Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1470 ATGTCGATAAAAACTGTCAAAGTCAGTAACGTTTCCTTGGGAGCAACTGAGCGGGACATTCAGGAGTTCTTTTCTTTTTCTGGTGACATTCATTATGTTGAACTAAGGAGTCATGATGAACGGTCTCAAATTGCTTATGTAACCTTCAAGGATTCACAGGGAGCTGAGACTGCAGTATTGCTATCGGGAGCAACAATAGTTGACCTGTCGGTTACAATAACTCTGGATCCAGATTACAAACTTCCACCTGGTGTCGTGGTTTCATCTGGAAATGAAACTCAAACTCCTGGTGGTGCTGAATCTGCTCTGCGGAAGGCAGAGGATGTAGTCTCCAGCATGGTAGCCAAAGGCTTTATCTTAGGGAAAGATGCTGTCAACAAAGCGAAGACTTTTGATGAGAAGCTCCAGATATCATCGACAGCATCAGCAACTGTTGCATCTTTTGACCAAAAACTTGGGCTTAGTGAAAAAATAGGTGCCGGTGCTTCAGTTGTGAGTGATAAAGTTCGAGAAGTGGATCAAAAGTTTCTTGTTTCAGAAAAGACAAAAACAGCATTTGCAGCTGCAGAACAGACAGTCAGCAGTGCTGGTTCTGCGATAATGAAGAATCGCTATATACTTACTGGGGCTACTTGGGTAACGGGTGCTTTTAGTAGGGTTTCTAAGGCAGCTGTGGAAGTAGGTCAGAAAACAAAAGAGAAAGTGGAGAATGCAGAACAGCAAGAGAAGCGAGAGGTTGAAGATCAGCATGCAAAGGTCCATTCTGAGTCCCCAAAAGCAGCAGCAGCAGCAAGTGACCAGCAGTCTCCCAGGCGTGGTCCTGCTCCTGCTCAGGGTTTGATCCTTTGA 849 0.4499 MSIKTVKVSNVSLGATERDIQEFFSFSGDIHYVELRSHDERSQIAYVTFKDSQGAETAVLLSGATIVDLSVTITLDPDYKLPPGVVVSSGNETQTPGGAESALRKAEDVVSSMVAKGFILGKDAVNKAKTFDEKLQISSTASATVASFDQKLGLSEKIGAGASVVSDKVREVDQKFLVSEKTKTAFAAAEQTVSSAGSAIMKNRYILTGATWVTGAFSRVSKAAVEVGQKTKEKVENAEQQEKREVEDQHAKVHSESPKAAAAASDQQSPRRGPAPAQGLIL* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1470 282 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7 66 IPR000504 GO:0003723
Tpr2g1470 282 SMART rrm1_1 5 74 IPR000504 GO:0003723
Tpr2g1470 282 Coils Coil 232 252 - -
Tpr2g1470 282 MobiDBLite consensus disorder prediction 233 282 - -
Tpr2g1470 282 MobiDBLite consensus disorder prediction 233 255 - -
Tpr2g1470 282 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 78 IPR000504 GO:0003723
Tpr2g1470 282 PANTHER BINDING PARTNER OF ACD11 1 1 263 - -
Tpr2g1470 282 SUPERFAMILY RNA-binding domain, RBD 3 76 IPR035979 GO:0003676
Tpr2g1470 282 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 263 - -
Tpr2g1470 282 Gene3D - 2 74 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1470 Tpr-Chr2 17326068 17329976 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1470 - - mtr:MTR_5g029640 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1470 2 17326068 17329976 Tpr2g1470 2 17326068 17329976 ECH