Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1267 ATGCAAACATGGGTAGTTTCCCAATTGCAGCTAAAGCACCACATAACAAGATGGACCTTTCAAAATTTAGTCTTGCTTCAATTTCGACCTAGAAGTTCATCTTCGTTCTATTCATTTTCTTCACAAAACCACAAAAATATGAAATTCAGCATTGTTCCGAGGAAAAATGTTCCTTTTTTCCCACGTCATCCTTCCTTGTTGTCATGTTATTGTCGCCGTTTTTGCATCGCCATTCATCTGTTCGATAAAATGCCACAAAGGGATTTTCATGTAAGAGACGTTCATTTTGAGCTTGTGGTTGATTGCATCAAATTGTCCCTGAAAAAACCTAACATTGTGACTGCCACTGTTGTCCATTGTGCTGCCTTGAAGATAGGTGCTCTAGCTTACCTTCCTACTTCGACATCTCTACTCACTCTCTATTCCAAAGCTGGAGGCTTTACCTCATCTAGGGTTTTATTTGAAGACATACACATTAAAGATGCGATTGTTTGGAATGCTGTTATTTCTGCATCTCTTGAAAACAATTGCTATAGGACAGCAGTGGAGTTCTTTCAGAAAATGATCAAGGACCAAACTAGGTTTGATTCCACCACTCTATTGCTTATGGTATCAACTTTGTCGCACATGAAAAACTTTGTTCAAGGAAGGGTAATTCATTGTGTAGGTATAAAATCTGGGATGCTTGTGGATATTAGTTTATGTAATGCTCTTATTAACATGTATGCGAAGTGTGGTGACCTAAACTCTTTTGATTCTGAGTGTCTATTTGAAGAGATGGAATATAAAGATGTTGTCTCGTGGAACTCGATAATGAGAGGATGTCTTTACAACGGCGATTCAGAGAAATCGTTATATTACTTCGGAAGGATGAATTTTTCGGAAGAAACAGCAGACCATGTCAGCCTTTCTTGTGCTATTTCAGCGTGTACGAGTTTGGGAGAATTGGCTTTTGGAGAATGCATTCATGGTCAAGGAATCAAGCTAGGGTACAAGGATAGCTCTCATGTTTCGGTTGCAAACTCTCTCATTTCGTTATATTCACAATGTGCAGCCGTTGAGGCTGCTGTGACTGTATTCAGAGAAATAGCATACAAAGATATTATTTCTTGGAATGCAATGATGGAAGGATATGCTTCAAATGAAAATATTCATGAAGTGTTTGATCTTATGGTTGAAATGCAAACTACAGGATCTTTCCAACCTGATATAGTAACATTAACTACCATACTTCCACTTTGTGCAGACCTAATGCTCTCCAGAGAAGGAAGAACTATCCATGGATATGCAATTAGAAAACAGATGTTATCTGATCATCTTCCTTTGCTGAATGGCCTTATAGACATGTATTCGAAGTGCAACCTTGTCGAGAAAGCTGAGCTTTTGTTCAATTCTACAAAAGAGAGAGACTTGATCTCATGGAATGCAATGATATCTGGCTATTCCTTGAACAAATATTCTGAAAAGGCTCAAAATTTGTACAAAGAACTGCTATGTTACGGTCCAAATTGCAGCTCATCAACTGTTTTCGCCATTCTATCTTCCTGCAACTCTCCTAATCGTCTCAACTTTGGAAAATCGGTTCACAGCTGGCAATTAAAATCTGGTTTTTTGAACCACATTCTCTTAGTAAATTGTCTCATGCAAATGTATATCAATTGTGGAGACCTAACTTCTGGTTTCTCAATTTTGCTGGAGAATTCTTCTATAGCAGATATTGCTTCATGGAACACTATAATTATAGGTTGTGTAAGAGGTGAACATTTTCAAGAGGCTTTAGAGACTTTCAGGTTAATGAGGCAAGGACCTTCCTTCAACTATGACTCCATAACCCTTGTAAATGTTTTATCAGCCATTGCAAACATGGAACTACTCAACCAAGGAAAGTCTCTTCACAGCATTGCACTTAAATCTCCTTTAGGATCGGATACACGTGTTCAGAACTCGTTAATTACCATGTATGACAGATGCAGGGACATCAACAGTGCTAGAAAAGTGTTCAAATTACATTCCAGTTCCAATCTATGCACATGGAACTGCATGATCTCAGCTTTATCACATAACAAGGAGAGTAGAGAAGCATTGGATCTATTCCGCCGTCTTCAGTTTAAACCGAATGAGTTCACCATTGTTAGTGTTCTCTCCGCATGCACTCAAATCGGTGTTCTAAGACACGGAAAACAAGTTCATGGTTACATGTTCAGGAATGGATATCAACAAAATTCTTTCATATCAGCAGCTCTTGTAGACTTGTACAGCAACTGCGGCAGACTGGACAATGCTCTCAAAGTATTCAGACATTCACAGAAGTCGGAATCTGCTTGGAATTCAATGATTGCTGCATATGGTAATCATGGAAATGGTGAAAAAGCAATCAAACTGTTCCGTGAGATGTGCGAGTCAGGAACAAAAGCAACCAAAAGCACATTTGTTAGCCTTTTATCTGCATGCACCCATTCAGGACTTGTGAACCAAGGACTTCAGTACTATGAATGTATGTTGGAGAAATATAGCATAAAACCTGAGGCTGAGCATCAAGTTTATGTGGTTGACATGTTAGGAAGATCAGGTAGAATTGACGAAGCTTATGAGTTTACAAAAGGGTTGCAATCCAATGCAAGTTCAGGTGTATGGGGAATGCTTTTGAGTGTATGCAACTATCATGGAGAAATTAAGTTGGGAAAAAAGGTTGCTGAAAAACTATTTGAAATGGAACCTCAAAATGTTGGATATTATATATCATTGTCAAATATGTATGTTGCTGCAGGAAGCTGGAAAGATGCTACTGAGTTGAGACAATCTGTCCATGACCAAGGATTGAGAAAATGTACAGCTTATAGTCTAATTGATGTTGGTTTGGGATAA 2865 0.3846 MQTWVVSQLQLKHHITRWTFQNLVLLQFRPRSSSSFYSFSSQNHKNMKFSIVPRKNVPFFPRHPSLLSCYCRRFCIAIHLFDKMPQRDFHVRDVHFELVVDCIKLSLKKPNIVTATVVHCAALKIGALAYLPTSTSLLTLYSKAGGFTSSRVLFEDIHIKDAIVWNAVISASLENNCYRTAVEFFQKMIKDQTRFDSTTLLLMVSTLSHMKNFVQGRVIHCVGIKSGMLVDISLCNALINMYAKCGDLNSFDSECLFEEMEYKDVVSWNSIMRGCLYNGDSEKSLYYFGRMNFSEETADHVSLSCAISACTSLGELAFGECIHGQGIKLGYKDSSHVSVANSLISLYSQCAAVEAAVTVFREIAYKDIISWNAMMEGYASNENIHEVFDLMVEMQTTGSFQPDIVTLTTILPLCADLMLSREGRTIHGYAIRKQMLSDHLPLLNGLIDMYSKCNLVEKAELLFNSTKERDLISWNAMISGYSLNKYSEKAQNLYKELLCYGPNCSSSTVFAILSSCNSPNRLNFGKSVHSWQLKSGFLNHILLVNCLMQMYINCGDLTSGFSILLENSSIADIASWNTIIIGCVRGEHFQEALETFRLMRQGPSFNYDSITLVNVLSAIANMELLNQGKSLHSIALKSPLGSDTRVQNSLITMYDRCRDINSARKVFKLHSSSNLCTWNCMISALSHNKESREALDLFRRLQFKPNEFTIVSVLSACTQIGVLRHGKQVHGYMFRNGYQQNSFISAALVDLYSNCGRLDNALKVFRHSQKSESAWNSMIAAYGNHGNGEKAIKLFREMCESGTKATKSTFVSLLSACTHSGLVNQGLQYYECMLEKYSIKPEAEHQVYVVDMLGRSGRIDEAYEFTKGLQSNASSGVWGMLLSVCNYHGEIKLGKKVAEKLFEMEPQNVGYYISLSNMYVAAGSWKDATELRQSVHDQGLRKCTAYSLIDVGLG* 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1267 954 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 470 504 IPR002885 -
Tpr2g1267 954 Gene3D Tetratricopeptide repeat domain 329 419 IPR011990 GO:0005515
Tpr2g1267 954 Gene3D Tetratricopeptide repeat domain 220 320 IPR011990 GO:0005515
Tpr2g1267 954 Gene3D Tetratricopeptide repeat domain 420 526 IPR011990 GO:0005515
Tpr2g1267 954 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 572 602 IPR002885 -
Tpr2g1267 954 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 674 704 IPR002885 -
Tpr2g1267 954 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 771 805 IPR002885 -
Tpr2g1267 954 PANTHER - 503 702 - -
Tpr2g1267 954 PANTHER - 673 951 - -
Tpr2g1267 954 PANTHER - 299 517 - -
Tpr2g1267 954 PANTHER - 212 414 - -
Tpr2g1267 954 PANTHER - 65 315 - -
Tpr2g1267 954 Pfam E motif 888 944 IPR046848 -
Tpr2g1267 954 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 231 267 IPR002885 -
Tpr2g1267 954 Pfam PPR repeat family 773 817 IPR002885 -
Tpr2g1267 954 Pfam PPR repeat family 366 412 IPR002885 -
Tpr2g1267 954 Gene3D Tetratricopeptide repeat domain 602 721 IPR011990 GO:0005515
Tpr2g1267 954 Gene3D Tetratricopeptide repeat domain 66 219 IPR011990 GO:0005515
Tpr2g1267 954 SUPERFAMILY TPR-like 439 934 IPR011990 GO:0005515
Tpr2g1267 954 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 401 IPR002885 -
Tpr2g1267 954 TIGRFAM PPR: pentatricopeptide repeat domain 575 600 IPR002885 -
Tpr2g1267 954 TIGRFAM PPR: pentatricopeptide repeat domain 774 804 IPR002885 -
Tpr2g1267 954 TIGRFAM PPR: pentatricopeptide repeat domain 369 403 IPR002885 -
Tpr2g1267 954 TIGRFAM PPR: pentatricopeptide repeat domain 676 702 IPR002885 -
Tpr2g1267 954 TIGRFAM PPR: pentatricopeptide repeat domain 266 291 IPR002885 -
Tpr2g1267 954 Pfam PPR repeat 575 601 IPR002885 -
Tpr2g1267 954 Pfam PPR repeat 444 469 IPR002885 -
Tpr2g1267 954 Pfam PPR repeat 266 291 IPR002885 -
Tpr2g1267 954 Pfam PPR repeat 472 501 IPR002885 -
Tpr2g1267 954 Pfam PPR repeat 164 191 IPR002885 -
Tpr2g1267 954 Pfam PPR repeat 677 702 IPR002885 -
Tpr2g1267 954 Gene3D Tetratricopeptide repeat domain 722 950 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1267 Tpr-Chr2 14762370 14765629 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1267 299 952 Glycoside Hydrolase AT3G49170 28.806 1.27e-92 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1267 - - gmx:100775736 1386.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1267 2 14762370 14765629 Tpr2g1267 2 14762370 14765629 ECH