Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1248 ATGAAAGCCATCGTTGTTCCACCACCGCCGGCACCACCCATCCGCCGCAATGCAGACAAAACTTCAACCACCACTTGTCCTTCTTCCAACCACCAACTTCACCTTCGTCTACCTCTCTACAACCCCAACCCCAAAAAACTCTCTCTCCTTCCCAATTTCCCTCATCAACCTTCTCCACAACCCATTACTCTTCCGGTGAACAAAAACAATAACAAAAAGGAGAAGAAGAAGAAGAATAAGAGAAGAAAATGTGACACAACTTCACACATTTTGCCCTTAATGGATGCACTTCACTTTCCCATATCCATTGATATTTACACCTCTTTAGTCAAAGAATGCACTCTTTCCGGCGACTCAGAAACCGCTATTGAGTTGTATACACACATCATAAATAGTGGCATTGAACCTCCATTAAACTTGCTCAATCGGATTCTTATCATGTTTGTTTCGTGCGGTTTGTTTGAGAATGCTCGCCATGTGTTTGATGAAATGTCTGTTAGGAATTTTCATTCTTGGGCGATTTTGTTTGTTGGTTATTATGAAAATTCTGATTATGAGAATGCAACGGATGTATTTCTTGGTATGTTATGTCAATTGGGTGTGATGGAGTTTCCGTTTCCTCCATGGATTTGGTCTTGTTTTCTCACGGTTTGTGCCTGCACTTTGAATGTTCCTCTAGGAATGCAAGTTCATGGATGTTTGTTAAAGCTGGGTGCTTGTGACCATGTCCTTGTCAGTAGCTCTTTGATCAGATTTTATGGGAGGTTCAAGTGTTTGGAAGATGCAAACATTGTTTTTAATAAAGTGACGCGGCATAACACGTTGACTTGGACTGCTAAAATTGTCAGTGGTTGTAAAGAAAGGCATTTCTCTGAGGTTCTTGGTGATTTCAAGGAGATGGGAAGGGTAGGGATAAAGAAGGACAGTTTTACATTTTCCAGTGTTCTTAAAGCTTGTGGTAGGATGCATAATCATGGAAGCTGTGGTGAGCAGGTTCATGCTGATGCCATCAAACTGGGAATTGACTCGGATAACTATGTGCAGTGTAGTTTGATAGCTATGTATGGAAGAAGTCGGTTACCGAGAAATGCAAAAATGGTGTTTGAAATGACCCGAAATGAAAGAAATGTTGATAGTTGGAATGCCATGTTTATGGGTTTCATACAGAATGGTTTGTACATTGAAGCTGTTAAGTTTGTGTATCAGATGAAGGAGGCTGGAGTGCAGCCACATGAACCATTGCTTGAAAAACTAAGAATTGCTTGTGGCAGTTCTACATTTCAAGCATGA 1290 0.4093 MKAIVVPPPPAPPIRRNADKTSTTTCPSSNHQLHLRLPLYNPNPKKLSLLPNFPHQPSPQPITLPVNKNNNKKEKKKKNKRRKCDTTSHILPLMDALHFPISIDIYTSLVKECTLSGDSETAIELYTHIINSGIEPPLNLLNRILIMFVSCGLFENARHVFDEMSVRNFHSWAILFVGYYENSDYENATDVFLGMLCQLGVMEFPFPPWIWSCFLTVCACTLNVPLGMQVHGCLLKLGACDHVLVSSSLIRFYGRFKCLEDANIVFNKVTRHNTLTWTAKIVSGCKERHFSEVLGDFKEMGRVGIKKDSFTFSSVLKACGRMHNHGSCGEQVHADAIKLGIDSDNYVQCSLIAMYGRSRLPRNAKMVFEMTRNERNVDSWNAMFMGFIQNGLYIEAVKFVYQMKEAGVQPHEPLLEKLRIACGSSTFQA* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1248 429 Gene3D Tetratricopeptide repeat domain 76 215 IPR011990 GO:0005515
Tpr2g1248 429 Pfam PPR repeat 144 168 IPR002885 -
Tpr2g1248 429 Pfam PPR repeat 379 408 IPR002885 -
Tpr2g1248 429 Gene3D Tetratricopeptide repeat domain 216 327 IPR011990 GO:0005515
Tpr2g1248 429 Gene3D Tetratricopeptide repeat domain 328 425 IPR011990 GO:0005515
Tpr2g1248 429 PANTHER PPR REPEAT PROTEIN 70 425 - -
Tpr2g1248 429 MobiDBLite consensus disorder prediction 58 84 - -
Tpr2g1248 429 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 410 IPR002885 -
Tpr2g1248 429 MobiDBLite consensus disorder prediction 1 15 - -
Tpr2g1248 429 PANTHER OS07G0578800 PROTEIN-RELATED 70 425 IPR045215 GO:0003723|GO:0009451
Tpr2g1248 429 TIGRFAM PPR: pentatricopeptide repeat domain 379 410 IPR002885 -
Tpr2g1248 429 MobiDBLite consensus disorder prediction 1 22 - -
Tpr2g1248 429 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 102 136 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1248 Tpr-Chr2 14605930 14607465 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1248 300 427 Glycoside Hydrolase AT3G49170 36.641 1.33e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1248 - - gmx:100778405 562.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1248 2 14605930 14607465 Tpr2g1248 2 14605930 14607465 ECH