Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1134 ATGAGCGCTTCTAGGTTTATTAAATGTGTCACTGTTGGTGATGGAGCTGTTGGCAAAACTTGTTTGCTTATTTCTTACACCAGCAATACTTTCCCTACGGATTATGTGCCAACAGTTTTTGACAATTTCAGTGCAAATGTGGTTGTTAATGGAGCCATTGTCAATCTGGGTTTGTGGGATACTGCTGGACAAGAGGATTATAACAGATTAAGACCTTTGAGTTACCGTGGTGCCGATGTTTTCATATTGGCTTTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGTCTCTAAAAAGTGGATTCCAGAGTTGAAGCATTATGCACCTGGTGTCCCCATAGTTCTGGTTGGCACAAAGCTTGACCTTCGGGATGATAAGCAGTTCTGCATAGACCATCCTGGTGCAGTTCCCATTACCACAGCTCAGGGAGAAGAGCTGAGGAAGCTGATTAATGCACCAGCTTACATTGAATGCAGCTCAAAATCACAGGAGAACGTGAAGGCAGTGTTTGACGCGGCCATAAGAGTTGTCCTTCAACCACCAAAGCAGAAGAAAAAGAAGGGGGGTAAAGCACAAAAGGCCTGTTCAATATTGTAA 597 0.4338 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGAIVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFCIDHPGAVPITTAQGEELRKLINAPAYIECSSKSQENVKAVFDAAIRVVLQPPKQKKKKGGKAQKACSIL* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1134 198 CDD Rop_like 6 178 - -
Tpr2g1134 198 ProSiteProfiles small GTPase Rho family profile. 1 177 - -
Tpr2g1134 198 Pfam Ras family 8 178 IPR001806 GO:0003924|GO:0005525
Tpr2g1134 198 PRINTS Transforming protein P21 ras signature 7 28 - -
Tpr2g1134 198 PRINTS Transforming protein P21 ras signature 30 46 - -
Tpr2g1134 198 PRINTS Transforming protein P21 ras signature 47 69 - -
Tpr2g1134 198 PRINTS Transforming protein P21 ras signature 109 122 - -
Tpr2g1134 198 PRINTS Transforming protein P21 ras signature 155 177 - -
Tpr2g1134 198 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 1 198 - -
Tpr2g1134 198 Gene3D - 5 191 IPR027417 -
Tpr2g1134 198 PANTHER RHO FAMILY GTPASE 1 198 IPR003578 GO:0005525|GO:0007264
Tpr2g1134 198 ProSiteProfiles small GTPase Ras family profile. 2 198 IPR001806 GO:0003924|GO:0005525
Tpr2g1134 198 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 178 IPR027417 -
Tpr2g1134 198 SMART ras_sub_4 4 180 - -
Tpr2g1134 198 ProSiteProfiles small GTPase Rab1 family profile. 2 198 - -
Tpr2g1134 198 TIGRFAM small_GTP: small GTP-binding protein domain 7 171 IPR005225 GO:0005525
Tpr2g1134 198 SMART rab_sub_5 7 180 - -
Tpr2g1134 198 SMART rho_sub_3 9 180 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1134 Tpr-Chr2 13253150 13256319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1134 7 180 EF-hand Containing Proteins AT5G27540 25.287 3.58e-16 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1134 K04392 - gmx:100808748 371.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1134 2 13253150 13256319 Tpr4g4305 4 50272175 50276065 ECH
Tpr2g1134 2 13253150 13256319 Tpr2g1134 2 13253150 13256319 ECH
Tpr2g1134 2 13253150 13256319 Tpr4g4305 4 50272175 50276065 PCT