Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3886 ATGATTGCAAATGACTTCCACGACGAAGACAAATGGCTCGCCGAAGGAATCGCCGCCATTCAACACAACGCATTCTTCATGCATCGCGCTCTCGATGACAATAATCTCAGAGATTCACTCAAATACTCTGCGCAGATGCTATCTGAGCTTCGAACTTCTAGGCTTTCACCTCATAAATATTATGAACTGTATATGAGAGCCTTTGATGAGCTACGGCGGTTGGAGATGTTCTTCAAAGACGAAAGTAGACACGGTGTTTCAATAGTTGATCTGTATGAGCTTGTTCAACATGCTGGAAATATATTGCCTAGATTGTATCTTCTTTGCACGGTAGGATCTGTTTACCTTAGGTGTAAGGATACTCCTGTAAGGGAGGTTCTTAAAGACCTAGTAGAGATGTGTCGCGGCGTTCAGCATCCGATTCGCGGTCTGTTTTTGAGGAGTTATCTTTCTCAAGTCAGCAGAGACAAGTTGCCTGATATTGGTTCCGAATACGAAGATGGGGATTATGGCAGTGTAAAGGATGCAGTTGAATTTGTTCTAGAGAATTTCTCAGAAATGAACAAGCTCTGGGTTCGATTGCAACATCAGGGACCCGGTCGGTTAAAAGAGAAGAAGGATAAAGAAAGGAACGAGCTTCGCGATCTTGTAGGGAAAAACCTCCATGTTCTGAGTCAGATAGATGGCGTGGACCTTGAGATGTACAAAGACACCGTCCTTCCAAGTGTTCTAGAGCAGGTTGTCAACTGTAAAGATGAGCTTGCCCAATTTTATCTCATGGAGTGCATAATCCAGGTTTTTCCAGATGAATACCACTTGCAGACACTTGAGACACTCTTAGGTGCTTGCCCCCAATTACAGCCTACAGTAGACATCAAGACAGTGTTATCTCAGTTAATGGACAGGTTGTCAAATTATGCCGCCTCAAGTTCTGAAGTTTTACCCGAATTTTTGCAAGTGGAAGCATTTACCAAACTAAGTACTGCAATAAGCAGGGTGATAGAAGCACAGGTTGACATGCCTATTGTGGGTGCCATATCTCTGCATGTCTCTCTTCTTACATTTACTCTCCGTGTTCATCCGGACCGACTTGATTATGTGGATCAAGTACTGGGATCATGTGTCAAGAAGCTGTCTGGGAAACCAAAGCTTGATGACAATAGAGCAACAAAGCAAGTTGTTGCACTTTTAAGCGCCCCACTTGATAAATACAATGATGTTGTGACTGCTCTGACACTTTCCAATTATCCTCGTGTGATGGATCATCTTGATAATGTGACAAATAAACTCATGGCTCTGGTTATTATTCAAAGCATTATGAAGAATAATACCTACATATCTACCGCCGATAAGGTTGAAGTTTTATTTGAATTAATAAAAGGGCTTATAATAGATTTGGATGGAACATCCGAGGATGAGATCGATGAAGAAGATTTCAGCGAGGAACAAAATTCTGTTGCCCGCCTTATAAACATGCTTCATAATAATGACCCGGAGGAAATGTTCAAGATAATATGTACAGTAAAGAAACATATTATGAGTGGAGGACCAAGGCGCCTACCTTTCACTGTTCCTTCTCTTATATTTTCTGCACTTAAGTTGATCAGGCAATTGCAAGCCCAAGGTGGAGACATAGCAGGAGAAGAAGAACCTGCAACACCCCGAAAATTATTTCAGCTTTTAAATGAGACGATCGAAGTTCTATCTTCTCTATCATCTCCTGAACTGGCCCTGAGGATGTATCTGCACTGTGCTGAGGCTGCTAATGATTGTGACCTCGAGCCTGTTGCTTATGAGTTTTTCACTCAGGCATTTGTATTATACGAAGAAGAAATTGCGGACTCCAAAGCCCAAGTAACTGCAATACATTTAATTATCGGGACTCTCCAGAGAATGAACATCTTTGGTGTTGAGAACAGGGATACATTAACACACAAGGCCACAGGGTATTCCGCAAAGCTTTTGAAGAAACCTGATCAGTGTCGAGCTGTTTATGCATGCTCACATCTCTTTTGGGTTGATGATCAAGATGGTATTAAGGATGGAGAGAGGGTTTTGCTTTGTCTCAAGCGTGCTTTGAGGATTGCAAATGCTGCTCAGCAAATGGCCAATGTTGCCAGGGGTAGCAGCGGACCAGTTACACTTTTTGTTGAAATACTGAATAAGTACATTTACTATTATGAGAAAGGAAATCCACAGATTACCAGTGCTACTATTCAGGGGCTTATAGAATTAATCAAGACTGAGATGCAGAGTGACTCTGCGTCAGCTCTCCCAGCTTCAGATCCTTTCTTTGCTAGCACACTGAGGTACATTCAATTTCAAAAACAGAAGGGCGGTATACTGGGTGAAAAATATGATTCTATCAAGGTGTGA 2376 0.4205 MIANDFHDEDKWLAEGIAAIQHNAFFMHRALDDNNLRDSLKYSAQMLSELRTSRLSPHKYYELYMRAFDELRRLEMFFKDESRHGVSIVDLYELVQHAGNILPRLYLLCTVGSVYLRCKDTPVREVLKDLVEMCRGVQHPIRGLFLRSYLSQVSRDKLPDIGSEYEDGDYGSVKDAVEFVLENFSEMNKLWVRLQHQGPGRLKEKKDKERNELRDLVGKNLHVLSQIDGVDLEMYKDTVLPSVLEQVVNCKDELAQFYLMECIIQVFPDEYHLQTLETLLGACPQLQPTVDIKTVLSQLMDRLSNYAASSSEVLPEFLQVEAFTKLSTAISRVIEAQVDMPIVGAISLHVSLLTFTLRVHPDRLDYVDQVLGSCVKKLSGKPKLDDNRATKQVVALLSAPLDKYNDVVTALTLSNYPRVMDHLDNVTNKLMALVIIQSIMKNNTYISTADKVEVLFELIKGLIIDLDGTSEDEIDEEDFSEEQNSVARLINMLHNNDPEEMFKIICTVKKHIMSGGPRRLPFTVPSLIFSALKLIRQLQAQGGDIAGEEEPATPRKLFQLLNETIEVLSSLSSPELALRMYLHCAEAANDCDLEPVAYEFFTQAFVLYEEEIADSKAQVTAIHLIIGTLQRMNIFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQDGIKDGERVLLCLKRALRIANAAQQMANVARGSSGPVTLFVEILNKYIYYYEKGNPQITSATIQGLIELIKTEMQSDSASALPASDPFFASTLRYIQFQKQKGGILGEKYDSIKV* 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3886 791 Pfam Vacuolar protein sorting-associated protein 35 12 748 IPR005378 GO:0015031|GO:0030906|GO:0042147
Tpr1g3886 791 Gene3D - 467 776 IPR042491 -
Tpr1g3886 791 PANTHER VACUOLAR SORTING PROTEIN 35 2 791 IPR005378 GO:0015031|GO:0030906|GO:0042147
Tpr1g3886 791 PIRSF Retromer_Vps35 3 791 IPR005378 GO:0015031|GO:0030906|GO:0042147
Tpr1g3886 791 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35A 2 791 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3886 Tpr-Chr1 42985182 42993894 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3886 K18468 - gmx:100775573 1414.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3886 1 42985182 42993894 Tpr1g3886 1 42985182 42993894 ECH