Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3881 ATGGATCACCACCACCAAACACTATCATTATTATTAATTCCATTCTTACTAACACTTCATCTATCATTTTCAGGTGTAATTTCAACAACATTTACTTTTGTTAACAAATGTGACTACACGGTGTGGCCTGGCATTCTTTCAAATGCCGGTGTCCCGCCTCTTCCAACCACCGGCTTCGTTCTTCAAACCGGCGAAACCTCAACCATCGCTGCACCGGCATCTTGGGGTGGCCGTTTCTGGGGCCGAACTCTCTGCTCAGAAGACACTACCGGAAAATTCTCATGTGTCACCGGAGATTGTGGCTCCGGCAAGGTAGAATGCTCCGGCGCCGGAGCTGCACCTCCGGCGACACTAGCTGAGTTCACTTTAGACGGCTCCGGTGGTCTTGATTTCTTCGACGTTAGTCTCGTCGACGGCTACAACGTGCCTATGATGGTGGCTCCACAGGGTGGCTCCGGCGAGAAGTGTACCACAACGGGTTGCATCGGAGATCTTAACGGCGCGTGTCCTTCAGAGCTTAGAGTAATGAGTGTTGATGGGAAAGAGGGTGTCGCGTGTAAAAGCGCGTGTGAGGCTTTTAACTCGCCGGAGTATTGTTGCAGCGGCGCGTATGGTACACCTGATACTTGCAAACCTTCTAGTTATTCAGAGTTGTTTAAGAATGCTTGCCCACGCGCTTATAGTTACGCGTATGATGATAAGACAAGTACTTTCACTTGTGCAAATGCAGTAGATTATACTATCACCTTTTGTTCTTCTCCTCCCACAAGTCAGAAGGCAACACAAGGGCAAGACACAAAACAGGAAAGTTCTTCAAATGATAACTCATCAGCATCACCTCAGCTTAACAATAACAATAACAAGGACAACACAATGGTGTATGAAGGTGGTTATGATCAAAGTGAAATTTCCAAGGCCATGTGCACCCATGTGCTCCAATCACAAACTATTATTGCATCCATTATTATAGCCATTTGGCGGTTATGCCAACTCTTCTAA 999 0.4685 MDHHHQTLSLLLIPFLLTLHLSFSGVISTTFTFVNKCDYTVWPGILSNAGVPPLPTTGFVLQTGETSTIAAPASWGGRFWGRTLCSEDTTGKFSCVTGDCGSGKVECSGAGAAPPATLAEFTLDGSGGLDFFDVSLVDGYNVPMMVAPQGGSGEKCTTTGCIGDLNGACPSELRVMSVDGKEGVACKSACEAFNSPEYCCSGAYGTPDTCKPSSYSELFKNACPRAYSYAYDDKTSTFTCANAVDYTITFCSSPPTSQKATQGQDTKQESSSNDNSSASPQLNNNNNKDNTMVYEGGYDQSEISKAMCTHVLQSQTIIASIIIAIWRLCQLF* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3881 332 SUPERFAMILY Osmotin, thaumatin-like protein 29 252 IPR037176 -
Tpr1g3881 332 ProSiteProfiles Thaumatin family profile. 28 251 IPR001938 -
Tpr1g3881 332 CDD TLP-PA 30 251 - -
Tpr1g3881 332 Pfam Thaumatin family 35 251 IPR001938 -
Tpr1g3881 332 MobiDBLite consensus disorder prediction 259 288 - -
Tpr1g3881 332 PIRSF PR5 1 293 IPR001938 -
Tpr1g3881 332 PANTHER BNAA02G17480D PROTEIN 10 279 - -
Tpr1g3881 332 SMART tha2 31 252 IPR001938 -
Tpr1g3881 332 PANTHER OS03G0233200 PROTEIN 10 279 IPR001938 -
Tpr1g3881 332 ProSitePatterns Thaumatin family signature. 91 107 IPR017949 -
Tpr1g3881 332 Gene3D Thaumatin 29 252 IPR037176 -
Tpr1g3881 332 PRINTS Pathogenesis-related protein signature 30 42 IPR001938 -
Tpr1g3881 332 PRINTS Pathogenesis-related protein signature 78 89 IPR001938 -
Tpr1g3881 332 PRINTS Pathogenesis-related protein signature 130 146 IPR001938 -
Tpr1g3881 332 PRINTS Pathogenesis-related protein signature 242 251 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3881 Tpr-Chr1 42933879 42936495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3881 7 271 Receptor kinase-like Gene Family AT5G38280 54.982 1.16e-97 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3881 - - gmx:100787631 529.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3881 1 42933879 42936495 Tpr1g3881 1 42933879 42936495 ECH