Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3789 ATGGCAACACTTTCTTGCAACGTTTCAGTGCGATCAGAGAGATCAAGCTTCCTCCCACCATTTTTTCCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTATCTCAAATTTTCTGCCATCGTGCTTATTTCCCTCACACTTCAAAAGCTTCATATTTTCCCCTCAAAATATCGTGCCGTGCCACTTCCATTGAATCAGCTTCTGTTGTGGAAAAAACCAAGGTGAAGGATTTTCTTCATATAAATGATTTTGACAGGGACACTATAAAGAAGATCTTGAATAGAGCCATTGAGGTGAAAGAATTAATAAAATCAGGGGACAAGACATTTCAACCATTTAAAGGGAAAACATTGGCAATGGTATTTGCAAAGCCATCATTGAGAACACATGTATCATTTGAGACTGGCTTTTCATTGTTGGGTGGACATGCTGTTTATTTAGCACCTGAGGATATCCAAATGGGATCGAGGGAGGAGACTCGCGATGTTGCTCGCATCTTGTCTCGTTTTACTGACATTGTTATGGCTCGTGTTTTTACTCATGAGGACATACTTACTCTTTCAAAGTATGCAACTGTACCAGTCGTCAATGGACTGACAGATTACAATCACCCCTGCCAGATAATGGCTGATGCCATTACTGTAATTGAGCATCTTAGTCGGATTGAAGGCACCAAGATTGCGTATGTTGGAGATGGAAACAATGTTGTCCATTCATGGCTGGAGCTGGCAAGCTTATTTCCTATTCACTTCACCTGTGCAACTCCAAAGGGCTTTGAACCAGATGCAAAAACAGTTGAGAAGGCGTGCCAAGCTGGAATCAGCAAGATTGTGATAACTAATGATCCCAAAGAGGCAGTCAAAGGAGCTGATATTGTTTATACAGATGTCTGGGCAAGTATGGGGCAAAAGGAAGAGGCTCAAAAGCGTCGTTTGATGTTCAAAGGATTTCAGGTGGACCAGAGTCTCATGGATTTAGCTGGCTCAAATGCATTATTCATGCATTGCTTGCCAGCAGAAAAAGGAGTGGAGGTGACCGAGGAAGTTATTGAAGGTCCAAAGTCAATTATATTCGCGCAAGCTGAAAATCGATTACATGCACAGAATGCTATAATGCTTCATGTGCTTGGCGAGTAA 1140 0.4158 MATLSCNVSVRSERSSFLPPFFPSSSSSSSSSSSLSQIFCHRAYFPHTSKASYFPLKISCRATSIESASVVEKTKVKDFLHINDFDRDTIKKILNRAIEVKELIKSGDKTFQPFKGKTLAMVFAKPSLRTHVSFETGFSLLGGHAVYLAPEDIQMGSREETRDVARILSRFTDIVMARVFTHEDILTLSKYATVPVVNGLTDYNHPCQIMADAITVIEHLSRIEGTKIAYVGDGNNVVHSWLELASLFPIHFTCATPKGFEPDAKTVEKACQAGISKIVITNDPKEAVKGADIVYTDVWASMGQKEEAQKRRLMFKGFQVDQSLMDLAGSNALFMHCLPAEKGVEVTEEVIEGPKSIIFAQAENRLHAQNAIMLHVLGE* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3789 379 Pfam Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 224 375 IPR006131 GO:0006520|GO:0016597|GO:0016743
Tpr1g3789 379 TIGRFAM orni_carb_tr: ornithine carbamoyltransferase 77 377 IPR002292 GO:0016743
Tpr1g3789 379 Hamap Ornithine carbamoyltransferase, catabolic [argI]. 76 378 IPR024904 GO:0004585|GO:0006591
Tpr1g3789 379 PANTHER ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL 22 378 - -
Tpr1g3789 379 Gene3D Aspartate/ornithine carbamoyltransferase 208 373 IPR036901 GO:0006520|GO:0016597|GO:0016743
Tpr1g3789 379 PANTHER ORNITHINE CARBAMOYLTRANSFERASE, CHLOROPLASTIC-LIKE 22 378 - -
Tpr1g3789 379 SUPERFAMILY Aspartate/ornithine carbamoyltransferase 74 378 IPR036901 GO:0006520|GO:0016597|GO:0016743
Tpr1g3789 379 Pfam Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 77 218 IPR006132 GO:0006520|GO:0016743
Tpr1g3789 379 PRINTS Ornithine carbamoyltransferase signature 121 135 IPR002292 GO:0016743
Tpr1g3789 379 PRINTS Ornithine carbamoyltransferase signature 154 167 IPR002292 GO:0016743
Tpr1g3789 379 PRINTS Ornithine carbamoyltransferase signature 194 208 IPR002292 GO:0016743
Tpr1g3789 379 PRINTS Ornithine carbamoyltransferase signature 294 304 IPR002292 GO:0016743
Tpr1g3789 379 PRINTS Ornithine carbamoyltransferase signature 356 367 IPR002292 GO:0016743
Tpr1g3789 379 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 123 142 IPR006130 GO:0006520|GO:0016597|GO:0016743
Tpr1g3789 379 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 205 216 IPR006130 GO:0006520|GO:0016597|GO:0016743
Tpr1g3789 379 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 330 339 IPR006130 GO:0006520|GO:0016597|GO:0016743
Tpr1g3789 379 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 342 365 IPR006130 GO:0006520|GO:0016597|GO:0016743
Tpr1g3789 379 Gene3D Aspartate/ornithine carbamoyltransferase 77 207 IPR036901 GO:0006520|GO:0016597|GO:0016743
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3789 Tpr-Chr1 41945281 41948038 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3789 K00611 - gmx:100796780 512.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3789 1 41945281 41948038 Tpr1g3789 1 41945281 41948038 ECH