Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3786 ATGGGAACATTAGGCAGAGCTATATACAGCGTTGGATTTTGGATTCGTGAAACTGGTCAAGCCATTGATCGCCTCGGTTCCCGCCTCCAGGGAAATTACTACTTTCAAGAACAGCTGTCCAGGCATCGAACTCTGATGAACATATTTGATAAGGCTCCTAGTGTTGATAAGGATGCATTTATTGCACCAAGTGCCTCCGTCATCGGTGATGTTCATATTGGCAGAGGATCATCCATTTGGTATGGATGTGTCATGAGAGGTGATGTGAACAGCATCAGTGTTGGAAGTGGAACCAACATTCAGGATAACTCCCTGGTGCACGTTGCAAAGTCAAATTTAAGTGGGAAGGTGTTGCCTACTACTATTGGGGATAATGTTACTGTAGGTCATAGTGCGGTTTTACATGGTTGCACTGTTGAGGACGAAGCTTTTGTTGGTATGGGTGCAACTCTACTTGATGGTGTCGTTGTTGAGAAACATGCCATGGTTGCTGCTGGTGCCCTTGTTAGACAGAATTCACGGATTCCAACTGGAGAGATTTGGGCAGGAAACCCTGCAAAGTTCCTGAGAAAACTCACTGCCGAAGAGATATCATTTATCTCTCAGTCAGCCATCAATTACAGTAACCTTGCACAGGTCCATGCAGCTGAAAATGCCAAGCCTTTTGATGAAATTGAGTTTGAGAAAGCGCTCCGGAAGAAGTTTGCACGTAAAGACGAGGAGTATGACTCAATGCTAGGCGTTGTTCGTGAGATCCCTCCAGAACTCATTCTTCCAGATAATGTCCTACCTGCTAAACAAACAAAGGTTTCCACACAATGA 822 0.4489 MGTLGRAIYSVGFWIRETGQAIDRLGSRLQGNYYFQEQLSRHRTLMNIFDKAPSVDKDAFIAPSASVIGDVHIGRGSSIWYGCVMRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNSRIPTGEIWAGNPAKFLRKLTAEEISFISQSAINYSNLAQVHAAENAKPFDEIEFEKALRKKFARKDEEYDSMLGVVREIPPELILPDNVLPAKQTKVSTQ* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3786 273 Gene3D Hexapeptide repeat proteins 43 222 - -
Tpr1g3786 273 CDD LbH_gamma_CA_like 54 212 - -
Tpr1g3786 273 SUPERFAMILY Trimeric LpxA-like enzymes 47 212 IPR011004 -
Tpr1g3786 273 PANTHER YRDA, PUTATIVE-RELATED 1 269 - -
Tpr1g3786 273 Pfam Hexapeptide repeat of succinyl-transferase 119 151 IPR001451 -
Tpr1g3786 273 PANTHER DYNACTIN SUBUNIT P25 1 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3786 Tpr-Chr1 41925627 41929581 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3786 K01726 - jre:108982315 498.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3786 1 41925627 41929581 Tpr1g3786 1 41925627 41929581 ECH