Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3769 ATGCCGTTATCTTCAGTCTCTACTCGTCTCACACTCCTTGCTCTCTTCTCCGCCACAACTTTCTACTGCATCTATAAATCTCGCCGTTTAAGAAACCTCAAACTAAACCTCTCTCTAAACCCTAACCCTAACACTAACACTAAACTCAATCTCCCTAAGATACTTTTCATTTCCGAAACCGGAACTTCCAAATCCCTCGCTAACCGTCTCCACCGTTTTCTTTCCTTAAACGACGTCGCATTTGAAATCATCGATGGACGAAGCTACGAACCCGAAGATCTCCCTAAGGAAACGATCCTTCTCATCGTTGCTTCCACTTGGGAAGACGGAAAACCACCGCCTGCTTATAGATTTTTTGCTGATTGGCTTGCTGAGAGTTCTGAAGATTTTAGAGTTGGTTCGTTGTTGCTTTCTAAGTGTAGGTTTGCGGTGTTCGGTGTCGGTAGTCGAGGTTATGGTGAGACTTTTAATGCGGTTGGTAAGGAGATTGTTAAACGGATGAAGGCGTTGGGCGGTGCTGAGATGATTCCGTTGTTTGAAGGGGATGTTGATGGTGGTGATGTGGATGAGGTTTTTGATAAGTGGTGTGTGAAGGTTGTTGAATTGTTGAAAGGGGGTGGTGGTGAGGATGGTGGTGATTTGGAGAATGGGGAGGAGGAATGTGGTGTTTTGAGTTCTGATGAAGAGGAGTCTGATGATGAGGAGGAGGAAGAGGTGGAATCGGATATTGTTGATCTTGAAGACATTGCCGGTAAAGCTCCTTCGAGGAAGTCCGTGGCTACGGTGGCGGAGACTAATGGGAAGTTGAATGGTGGCAAGAAACAAATGGTGACTCCTGTGATAAGAGCAAATTTGGTGAAACAGGGATATAAGATTATTGGTTCACATAGTGGTGTCAAGATTTGTAGATGGACTAAGTCACAGCTTCGTGGTCGAGGTGGTTGTTACAAGCATTCATTTTATGGAATCGAGAGTCATAGGTGCATGGAGGCAACCCCCAGCTTGGCATGTGCAAATAAATGTGTTTTCTGCTGGAGGCATCACACAAATCCAGTAGCAAAAAGTTGGCAGTGGGAGATGGACGATCCATTAGAGATTGTAAATTCTGCAATAGAGCAGCATACAAATATGATTAAACAAATGAAAGGAGTTCCCGGAGTCACCTTGGAGCGATTAAATGAAGGATTCACACCACGGCATTGTGCACTTTCTCTTGTTGGTGAACCTATTATGTATCCAGAGATAAATGCACTAGTGGATGAGTTGCACAGAAGGAGGATTTCCACTTTTCTAGTTACAAATGCACAATTTCCAGAGAAAATTAAGTCGCTGAAGCCAATCACTCAGTTATATGTCAGTGTTGATGCCGGAACAAAGGACTCTCTAAAGGCAATTGATAGACCACTCTTTGGAGATTTTTGGGAAAGGTTTATTGATTCCTTGACTGCTCTGAAGGAAAAACATCAGCGTACTGTATACCGTCTGACCCTTGTGAAAGGTTGGAATGCTGAAGAGGTTGATGCCTATTATAATCTCTTTAGTATAGGAGAACCCGACTTTATTGAAATCAAGGGAGTAACATATTGTGGCTCGACCGCTACATCAAAATTGACAATGGAAAATGTCCCTTGGCATGCCGACGTGAAAGCTTTCTCAGAGGCTCTGGCTCTGAAAAGCCAAGGGGAGTATGAAGTTGCCTGTGAGCATGTTCACTCATGTTGCGTGCTTTTAGCAAAAACTAAGAAGTTCAAAATTGATGGCCAGTGGTATACATGGATAGACTATGAGAAATTTCATGATCTGGTGGCTTCTGGAAGTACTTTTGACAGCAAAGATTATATGGCTGCCACACCAGCTTGGGCTGTCTATGGAGCTGAGGAAGGTGGATTTGATCCAGCACAATTAAGATATAAAAAAGAGAGACATCACAAGTCGAGTCGCAAAGAATCAGGTTAG 1956 0.4356 MPLSSVSTRLTLLALFSATTFYCIYKSRRLRNLKLNLSLNPNPNTNTKLNLPKILFISETGTSKSLANRLHRFLSLNDVAFEIIDGRSYEPEDLPKETILLIVASTWEDGKPPPAYRFFADWLAESSEDFRVGSLLLSKCRFAVFGVGSRGYGETFNAVGKEIVKRMKALGGAEMIPLFEGDVDGGDVDEVFDKWCVKVVELLKGGGGEDGGDLENGEEECGVLSSDEEESDDEEEEEVESDIVDLEDIAGKAPSRKSVATVAETNGKLNGGKKQMVTPVIRANLVKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVAKSWQWEMDDPLEIVNSAIEQHTNMIKQMKGVPGVTLERLNEGFTPRHCALSLVGEPIMYPEINALVDELHRRRISTFLVTNAQFPEKIKSLKPITQLYVSVDAGTKDSLKAIDRPLFGDFWERFIDSLTALKEKHQRTVYRLTLVKGWNAEEVDAYYNLFSIGEPDFIEIKGVTYCGSTATSKLTMENVPWHADVKAFSEALALKSQGEYEVACEHVHSCCVLLAKTKKFKIDGQWYTWIDYEKFHDLVASGSTFDSKDYMAATPAWAVYGAEEGGFDPAQLRYKKERHHKSSRKESG* 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3769 651 Pfam Radical SAM superfamily 333 512 IPR007197 GO:0003824|GO:0051536
Tpr1g3769 651 SUPERFAMILY Flavoproteins 54 203 IPR029039 -
Tpr1g3769 651 SUPERFAMILY Radical SAM enzymes 334 514 - -
Tpr1g3769 651 SFLD Radical SAM 273 583 IPR007197 GO:0003824|GO:0051536
Tpr1g3769 651 Pfam Wyosine base formation 516 579 IPR013917 -
Tpr1g3769 651 MobiDBLite consensus disorder prediction 208 240 - -
Tpr1g3769 651 Gene3D - 36 207 IPR029039 -
Tpr1g3769 651 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE 3 645 - -
Tpr1g3769 651 ProSiteProfiles Radical SAM core domain profile. 321 564 IPR007197 GO:0003824|GO:0051536
Tpr1g3769 651 CDD Radical_SAM 333 533 - -
Tpr1g3769 651 Gene3D Aldolase class I 259 591 IPR013785 -
Tpr1g3769 651 ProSiteProfiles Flavodoxin-like domain profile. 52 200 IPR008254 GO:0010181
Tpr1g3769 651 SFLD tRNA wybutosine-synthesizing 273 583 IPR034556 GO:0008033|GO:0051539
Tpr1g3769 651 PRINTS Flavodoxin signature 53 66 IPR001094 GO:0010181
Tpr1g3769 651 PRINTS Flavodoxin signature 101 112 IPR001094 GO:0010181
Tpr1g3769 651 PRINTS Flavodoxin signature 139 149 IPR001094 GO:0010181
Tpr1g3769 651 PRINTS Flavodoxin signature 164 183 IPR001094 GO:0010181
Tpr1g3769 651 Pfam Flavodoxin 54 195 IPR008254 GO:0010181
Tpr1g3769 651 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE 3 645 IPR034556 GO:0008033|GO:0051539
Tpr1g3769 651 MobiDBLite consensus disorder prediction 212 240 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3769 K15449 - gmx:100791920 994.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3769 1 41774340 41780189 Tpr1g3769 1 41774340 41780189 ECH