Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3747 ATGTTGGAAGCAATGGAAAGTTCAGTGAATGGTGGATTCTCACAACATTTACAAAGCTTTGGAGATAGTAGTGAAGAAGAACTCTCTGTTCTTCCTCGTCATACCAAAGTTGTTGTAACTGGTAACAACCGTACTAAATCAGTTCTTGTTGGTCTTCGTGGTGTTGTTAAGAAAGCTGTTGGTCTTGGTGGATGGCATTGGCTGGTTCTTACCAATGGTATTGAAGTGAAGCTGCAGAGGAATGCTCTTAGTGTGATTGAACCACCTACCGGTAACGAAGAAGATGACGACCTTGAATTTGAAAATGAAAATACCATTTGGCATGGATCAGATATGGCATCAGATGACACTCAAAAGTCCAACAAATCAAGGAATAGAATGCAAAGATCATTAGGATCGTCTCACAAGAGCATCAGCAGGTCCTTCTCTGTTGATTCACAGTCGAAGGGATCCATTTCTATGCCTCACGCATGGACGAAGGTTGACTTGAGCAAATTGGAAATGTCTGCGTTGTGGAGATATTGGCGACACTTCAATCTGGTGGATGCTGTTCCAAACCCATCAAAAGAGCAGCTGGTAGATGTTGTTCAGAGGCATTTCATGTCACAGCAAATGGACGAGTTGCAAGTTATTAGGGGATTTGTCAAAGCTGCAAAGAGACTTAAGACAACTATGTGCAAATGA 684 0.4211 MLEAMESSVNGGFSQHLQSFGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLRGVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEPPTGNEEDDDLEFENENTIWHGSDMASDDTQKSNKSRNRMQRSLGSSHKSISRSFSVDSQSKGSISMPHAWTKVDLSKLEMSALWRYWRHFNLVDAVPNPSKEQLVDVVQRHFMSQQMDELQVIRGFVKAAKRLKTTMCK* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3747 227 Pfam Sin3 binding region of histone deacetylase complex subunit SAP30 166 219 IPR025718 GO:0005515
Tpr1g3747 227 MobiDBLite consensus disorder prediction 124 152 - -
Tpr1g3747 227 PANTHER HISTONE DEACETYLASE COMPLEX SUBUNIT SAP30 SIN3-BINDING PROTEIN 1 227 - -
Tpr1g3747 227 PANTHER SAP30 1 227 IPR024145 -
Tpr1g3747 227 MobiDBLite consensus disorder prediction 105 152 - -
Tpr1g3747 227 Gene3D - 141 227 IPR038291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3747 Tpr-Chr1 41572684 41576195 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3747 - - gmx:100809195 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3747 1 41572684 41576195 Tpr1g3747 1 41572684 41576195 ECH