Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3726 ATGTTTGGCGACAAAAACAAAAACAAAAGCAAAAGCAAAAGCAAAAATAACAACGATGGCAATATTCCTCGACCTGAGTTCATGCAATCAGAACCCCGATTTTCCACCACGGAAGCCTATACCGATGATGACTACGCCATGCGTAGCAGCAGTGCGGCATCCCCCATGAGCCCTTACAACTATGACCCCGGCAGGTTAAGTGGTGAGGGCTCACCAATGATGATGTCGCCATGGAATCAAACAACAAATTCTCCATTCTCAAAGCCACAATGGTCACAACACGAAGAAGCACCCTCACAGAATTCTCTAATCGGTTCACTTGTTCGTGAAGAAGGTCACATATATTCATTGGCAGCTTCCGGTGACTTATTATACACTGGCTCAGATAGCAAGAACATTCGCGTGTGGAAGAATCTCCAAGAATATTGCGGATTCAAATCCAACAGTGGATTGGTAAAAGCAATAATAATCTCCGGTCAAAAAATCTTCACCGGTCACCAAGACGGTAAAATCAGAGTTTGGAAAGTTTCTCTCAAGAACCCTAGCATTCACAAACGTGCTGGAACATTACCAACACTCAAGGATATTTTCAAAAGCTCGATTAAACCAAGCAATTATGTTGAGGTTCGTAAACACCGAACTGCATTATGGATCAAACATTCTGATGCTGTTTCATGTCTCAGTCTTTCTTCAGACAAAACCTACCTCTACTCAGCTTCATGGGACAGAACAATCAAAGTTTGGAGAATCTCCGATTCCAAGTGCTTGGAATCAATTACTTGCCATGAAGACGCTGTTAACTCCGTTGTCTGTGCAAACGACGGAATTGTTTTCTCTGGTTCCGCGGATGGAACCGTTCAAGTGTGGCGTAGGGAAGCACGTGGGAAAGGAACGAAGCACGTGCAGGTTAAACAACTTTTAAAACAAGAATGCGCGGTAACTGCTTTAGCAGTTGATCCCACAGGAACAATGGTGTATTGTGGTGCTTCTGATGGGTTAGTTAATTTTTGGGAATGCAATAAGCAGTTTGCACACGGTGGGAACCTTAAAGGTCATAAACTTGCGGTTTTGTGTTTATCTTCTGCAGGGAATTTGGTATTTAGTGGTTCAGCTGATAAAACTATATGTGTGTGGAAAAGAGATGGTGTTATTCACACCTGTGTGTCTGTTTTAACGGGACATGATGGTCCCGTTAAGTGTTTAGCGGTGGAACAGGATCGTGACTCTGATGCTAGAGGTGATCAACGATGGGTATTGTACAGTGGGAGTTTGGATAAATCGGTTAAGGTTTGGAGTGTTTCCGAGAGTCTGCAGCAGCAGGTACGTATGGGTTTTGATGGGGATTCATTACCTTCTGAATCTGATAGCAGTTTTTCTTCGAGTCGCACTGGTGGTACTAGGAGGAATTAA 1410 0.4348 MFGDKNKNKSKSKSKNNNDGNIPRPEFMQSEPRFSTTEAYTDDDYAMRSSSAASPMSPYNYDPGRLSGEGSPMMMSPWNQTTNSPFSKPQWSQHEEAPSQNSLIGSLVREEGHIYSLAASGDLLYTGSDSKNIRVWKNLQEYCGFKSNSGLVKAIIISGQKIFTGHQDGKIRVWKVSLKNPSIHKRAGTLPTLKDIFKSSIKPSNYVEVRKHRTALWIKHSDAVSCLSLSSDKTYLYSASWDRTIKVWRISDSKCLESITCHEDAVNSVVCANDGIVFSGSADGTVQVWRREARGKGTKHVQVKQLLKQECAVTALAVDPTGTMVYCGASDGLVNFWECNKQFAHGGNLKGHKLAVLCLSSAGNLVFSGSADKTICVWKRDGVIHTCVSVLTGHDGPVKCLAVEQDRDSDARGDQRWVLYSGSLDKSVKVWSVSESLQQQVRMGFDGDSLPSESDSSFSSSRTGGTRRN* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3726 469 MobiDBLite consensus disorder prediction 1 99 - -
Tpr1g3726 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 289 IPR001680 GO:0005515
Tpr1g3726 469 Pfam WD domain, G-beta repeat 348 379 IPR001680 GO:0005515
Tpr1g3726 469 Pfam WD domain, G-beta repeat 220 248 IPR001680 GO:0005515
Tpr1g3726 469 Pfam WD domain, G-beta repeat 386 432 IPR001680 GO:0005515
Tpr1g3726 469 Pfam WD domain, G-beta repeat 254 289 IPR001680 GO:0005515
Tpr1g3726 469 Pfam WD domain, G-beta repeat 111 137 IPR001680 GO:0005515
Tpr1g3726 469 Pfam WD domain, G-beta repeat 311 337 IPR001680 GO:0005515
Tpr1g3726 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 306 338 IPR001680 GO:0005515
Tpr1g3726 469 SMART WD40_4 252 290 IPR001680 GO:0005515
Tpr1g3726 469 SMART WD40_4 210 249 IPR001680 GO:0005515
Tpr1g3726 469 SMART WD40_4 138 175 IPR001680 GO:0005515
Tpr1g3726 469 SMART WD40_4 342 379 IPR001680 GO:0005515
Tpr1g3726 469 SMART WD40_4 100 137 IPR001680 GO:0005515
Tpr1g3726 469 SMART WD40_4 384 432 IPR001680 GO:0005515
Tpr1g3726 469 SMART WD40_4 299 338 IPR001680 GO:0005515
Tpr1g3726 469 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 217 254 - -
Tpr1g3726 469 Gene3D - 216 344 IPR015943 GO:0005515
Tpr1g3726 469 Gene3D - 345 467 IPR015943 GO:0005515
Tpr1g3726 469 MobiDBLite consensus disorder prediction 444 469 - -
Tpr1g3726 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 349 379 IPR001680 GO:0005515
Tpr1g3726 469 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 25 445 IPR045182 -
Tpr1g3726 469 CDD WD40 111 432 - -
Tpr1g3726 469 PRINTS G protein beta WD-40 repeat signature 236 250 IPR020472 -
Tpr1g3726 469 PRINTS G protein beta WD-40 repeat signature 277 291 IPR020472 -
Tpr1g3726 469 PRINTS G protein beta WD-40 repeat signature 419 433 IPR020472 -
Tpr1g3726 469 Gene3D - 78 190 IPR015943 GO:0005515
Tpr1g3726 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 217 258 IPR001680 GO:0005515
Tpr1g3726 469 MobiDBLite consensus disorder prediction 15 57 - -
Tpr1g3726 469 SUPERFAMILY WD40 repeat-like 107 440 IPR036322 GO:0005515
Tpr1g3726 469 MobiDBLite consensus disorder prediction 73 99 - -
Tpr1g3726 469 PANTHER PROTEIN JINGUBANG 25 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3726 Tpr-Chr1 41382778 41385116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3726 210 433 Miscellaneous Gene Families AT5G08390 23.581 1.62e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3726 - - cam:101495885 780.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3726 1 41382778 41385116 Tpr1g3726 1 41382778 41385116 ECH