Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3567 ATGGCCGACGAATCCCAATACGACGCAACTCCACCTTCTCTCAAACGCAAGTACGATGAACAACCTCCTCACTCCAGACCCACCGGTTTCTCCGACGGACCTCCTCCTCCTTCCTACAACAACGTCCCTCCTCCCTCCACCACCGAATTCGAACTCATCAAACAACGCGCTCAAGAAGTCGCCGCTCGTCTCCTCGGCAACGCTGCTCCTCCTTCCGATATCGCTAAACGTACCAAATTCGATAACGGTCCTCCTCCCTCTTACGATTCATCTGATTTGAAAAGTCAATATTCAGCTCCAATGAGTATACCTTCGTATACACATCAAGGTTCGAGTAAGAAAATTGAAATCCCTAATGGGAGGGTTGGTGTTATCATTGGAAAAGCTGGAGAAACTATCAAGTATCTTCAGTTACAATCTGGTGCTAAAATTCAAGTCACTCGTGATATGGATGCTGATCCTAATTCTCCTAATAGACTGGTTGAGCTTACGGGTACTGCTGATGCTATTGCTACTGCTGAGAAACTCATCAATGATGTTCTTGCTGAGGCTGAATCTGGAGGTAATGGCCTTGTTACCCGACGAATGGGTGGACAAGGTGGCGCTGATGAGTTTTCAATGAAGATCCCAAATAACAAGGTTGGCCTTATAATTGGTAAAGGTGGAGAAACCATAAAGAATATGCAAGCTACGACTGGATCAAGAATTCAGGTGATTCCTCTTCATCTCCCGCCAGGTGACACATCCACCGAAAGAACATTAAAAATTGAAGGGACCTCTGAACAAATTGAATCTGCAAAACAACTGGTCGATTCAATCCTCAGTGGCGAGAATCGTCTTAGAAATCCATCAATGTCTGGTGGATACTCTCAGCAAGGTTACCAAGCTCGGCCACCATCTAGTTGGGCTCCTCCTGCTGCTTCAATGCAACAACCTGGTTATGGCTATGTGCAACCGGGAGCATACTCTGGTCCATCACCACAGTATAATGTGCCCCAGCAACCATATGCAGGTTATCCTCCTCAGTCAGCTGGTGGATATTCTACCAATTGGGACCAGTCCACTGCAACTACACAGCAGGCTGCTCATGCTGGGTATGATTACTATAGTCAACAGGCTCAGCAACAGCAGAATCCTGGTGGTCCTGCTCCTCCAGCTGATGGGACTGCTTATAATTACAGTCAACAACCTTCCTCTGGTTATAACCAATCGGGACAGGGCTATGGTCAGGATGGCTATGGTGCATATCAACAACCACCACAATCAGGGTATGGTCAGCCAACATCATATGATCAGCAGCAAGGTTATGGCTCGGCCCCAAGCTATGGCTCTGCACAAGATGGCCAAACTACCAACTATGGATCTCAAGGGGATTCATCTCAAGTTCCACCTGTCCAACCTTCCCAGCAAGGTTATGGTAGCAGCCAACAGCCTAGCCCAAATGCTGCTAACTATCCAACACAAGGTGCTGCTCAACCAGGTTATGGCGCCCCCCCAACTTCCCAAACAGCTTATGGAAATCAAACCCAAGTCCCGTCTGGCTATGCAGCCCCTCCATCTCAAAAGCCTAGTAGCACTCCTCCTGCATATGGACAATCACAGTCACCTAGTGCGGCAGCTGGTTATGGTCAACCAGGGTATCCTTCTTCCCAGCCCCCACCTTCTGCATATTCCCAACCAGAAACAGGTTCTCAAAGGGCACCACCATCTGGTTATGGCAGTGCTGTTCAACCAGGATATGGTCCTCCTTCGTATGGTGCTCCAGCAGGTAGTCAAGCTGGTTATGGTCAGGCACCACCGTCATACAGCAGCGGTTCTTATGGTGCTGGTTATCCTCAGGCCCCAGCATATTCTGCAGATGGTAATGCAAGTGGGAATACTCGTGGTGGTAGCTACGATGGAGCACCTGCACAGGCAGGTCAGCAGGCTAGTGTTGCCAAGTCACCCCAGAGCTGA 1956 0.4903 MADESQYDATPPSLKRKYDEQPPHSRPTGFSDGPPPPSYNNVPPPSTTEFELIKQRAQEVAARLLGNAAPPSDIAKRTKFDNGPPPSYDSSDLKSQYSAPMSIPSYTHQGSSKKIEIPNGRVGVIIGKAGETIKYLQLQSGAKIQVTRDMDADPNSPNRLVELTGTADAIATAEKLINDVLAEAESGGNGLVTRRMGGQGGADEFSMKIPNNKVGLIIGKGGETIKNMQATTGSRIQVIPLHLPPGDTSTERTLKIEGTSEQIESAKQLVDSILSGENRLRNPSMSGGYSQQGYQARPPSSWAPPAASMQQPGYGYVQPGAYSGPSPQYNVPQQPYAGYPPQSAGGYSTNWDQSTATTQQAAHAGYDYYSQQAQQQQNPGGPAPPADGTAYNYSQQPSSGYNQSGQGYGQDGYGAYQQPPQSGYGQPTSYDQQQGYGSAPSYGSAQDGQTTNYGSQGDSSQVPPVQPSQQGYGSSQQPSPNAANYPTQGAAQPGYGAPPTSQTAYGNQTQVPSGYAAPPSQKPSSTPPAYGQSQSPSAAAGYGQPGYPSSQPPPSAYSQPETGSQRAPPSGYGSAVQPGYGPPSYGAPAGSQAGYGQAPPSYSSGSYGAGYPQAPAYSADGNASGNTRGGSYDGAPAQAGQQASVAKSPQS* 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3567 651 PANTHER K DOMAIN-CONTAINING PROTEIN-RELATED 57 644 - -
Tpr1g3567 651 MobiDBLite consensus disorder prediction 389 540 - -
Tpr1g3567 651 CDD KH-I 112 177 - -
Tpr1g3567 651 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 205 277 IPR036612 GO:0003723
Tpr1g3567 651 Gene3D K Homology domain, type 1 105 200 IPR036612 GO:0003723
Tpr1g3567 651 Gene3D K Homology domain, type 1 201 299 IPR036612 GO:0003723
Tpr1g3567 651 ProSiteProfiles Type-1 KH domain profile. 202 270 - -
Tpr1g3567 651 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 57 644 - -
Tpr1g3567 651 MobiDBLite consensus disorder prediction 619 651 - -
Tpr1g3567 651 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 113 190 IPR036612 GO:0003723
Tpr1g3567 651 MobiDBLite consensus disorder prediction 285 307 - -
Tpr1g3567 651 MobiDBLite consensus disorder prediction 28 43 - -
Tpr1g3567 651 Pfam KH domain 206 271 IPR004088 GO:0003723
Tpr1g3567 651 Pfam KH domain 113 179 IPR004088 GO:0003723
Tpr1g3567 651 CDD KH-I 204 270 - -
Tpr1g3567 651 ProSiteProfiles Type-1 KH domain profile. 110 177 - -
Tpr1g3567 651 MobiDBLite consensus disorder prediction 556 571 - -
Tpr1g3567 651 MobiDBLite consensus disorder prediction 1 49 - -
Tpr1g3567 651 MobiDBLite consensus disorder prediction 61 94 - -
Tpr1g3567 651 MobiDBLite consensus disorder prediction 371 606 - -
Tpr1g3567 651 SMART kh_6 201 275 IPR004087 GO:0003676
Tpr1g3567 651 SMART kh_6 109 182 IPR004087 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3567 Tpr-Chr1 39817181 39822694 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3567 K13210 - gmx:100813135 755.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3567 1 39817181 39822694 Tpr1g3567 1 39817181 39822694 ECH