Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3559 ATGTCTTCGTCTCCTTCTTGTTCCGCTGCTGACAACAATCTTATGCGCAACCGAATTCTCTCCACCAAACTCTACTTCGACGTCCCACTCTCCAAGCTTCCGCTTATCTACTCCACCTCTTACGACATTTCCTTTCTCGGCATAGAGAAACTGCATCCATTTGATTCGTCTAAATGGGGAAGAATTTGTAATTTCCTTGTTTCTTTTGGTGTTCTGGATAAAAATCGTATTGTTGAGCCTCTAGAAGCTTCTAAAGATGACCTTCTTGTGGTACACTCAGAATCATACTTGAATAGTCTGAAGGAAAGTTCGAATGTTGCCAAGATAATCGAGGTCCCTCCTGTGGCATTATTTCCCAATTGTCTTGTGCAACATAAAGTTCTTTTCCCATTTAGGAAACAGGTTGGAGGAACTATATTGGCTGCAAAACTGGCAAAGGAGAGAGGGTGGGCCATTAATGTGGGAGGAGGTTTTCATCATTGTTCTGCAGAAAATGGCGGTGGATTTTGTGCTTATGCAGATATTTCTCTATGCATCCAGTTCGCTTTTGTTCAGTTGAATATATCGAGGGTGATGATTATTGATCTTGATGCACATCAAGGAAATGGTCATGAAATGGACTTCGCCGATGATAACCGAGTCTACATTCTGGATATGTATAACCCTGGTATATATCCTTTGGATTATGAGGCAAGAAATTACATAAATCAGAAAGTTGAAGTGAAGAGTGGGACTCGTACAGAAGAGTACCTGCTGAAATTAGATGAAGCACTTGAGGTTGCCGGGCGAAGGCTTGAACCTGAGTTGTTAGTTTATAATGCTGGAACTGACATCCTAGAAGGCGACCCTTTAGGAAGGTTGAAGATTAGTCCTGATGGAATTGCTCTTAGAGATGAAAAAGTTTTTCGGTTTGCTCGTGAGAAGAACATTCCTATTGTCATGCTCACTTCAGGTGGATACATGAAGTCCAGTGCTAGAGTCATTGCAGATTCAATAGTCAATCTCGAGAAGAAATGCTTGATAGAAACGAGTGGAGGTTCAAAGGATGCTTAG 1053 0.416 MSSSPSCSAADNNLMRNRILSTKLYFDVPLSKLPLIYSTSYDISFLGIEKLHPFDSSKWGRICNFLVSFGVLDKNRIVEPLEASKDDLLVVHSESYLNSLKESSNVAKIIEVPPVALFPNCLVQHKVLFPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSAENGGGFCAYADISLCIQFAFVQLNISRVMIIDLDAHQGNGHEMDFADDNRVYILDMYNPGIYPLDYEARNYINQKVEVKSGTRTEEYLLKLDEALEVAGRRLEPELLVYNAGTDILEGDPLGRLKISPDGIALRDEKVFRFAREKNIPIVMLTSGGYMKSSARVIADSIVNLEKKCLIETSGGSKDA* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3559 350 CDD HDAC_classIV 52 335 IPR044150 GO:0004407|GO:0016575
Tpr1g3559 350 Gene3D Histone deacetylase domain 35 345 IPR037138 -
Tpr1g3559 350 PANTHER HISTONE DEACETYLASE 11 9 344 - -
Tpr1g3559 350 Pfam Histone deacetylase domain 52 333 IPR023801 -
Tpr1g3559 350 PANTHER HISTONE DEACETYLASE 11 9 344 - -
Tpr1g3559 350 SUPERFAMILY Arginase/deacetylase 32 334 IPR023696 -
Tpr1g3559 350 PRINTS Histone deacetylase superfamily signature 156 179 IPR000286 -
Tpr1g3559 350 PRINTS Histone deacetylase superfamily signature 190 205 IPR000286 -
Tpr1g3559 350 PRINTS Histone deacetylase superfamily signature 267 277 IPR000286 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3559 K11418 - gmx:100781276 596.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3559 1 39733177 39738068 Tpr1g3559 1 39733177 39738068 ECH