Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3558 ATGCCCACAGATTCCTCTGATGATGCATCTAGAAGAGGAATAGGGGAGTGTATTTATGAGGTGTTGATGCCACTCATATCTGTTGTTGAGGTTTTTGTCTTTGCTGTCACAGGTTGTTTCAACACTTATCTTTCACTCCCAAACAACAAATCTGCTTATACTGCTAAGGACTTTACTCTTCTTGCTCAAGAAACCAGATTTACTGTTAATGAAGTGGAGGCATTGCATGAACTGTTTAAGAAGATAAGTAGCTCCTTAATTGATGATGGCTTGATTCACAAGGCGGAGCTTCAATTGGCACTATTTCAAACCCCAAATAGTGAAAATCTTTTTCTGGATCGAGTTTTTGATCTTTTTGATGAAAAGAGAAACGGTGTTATAGAGTTTGACGAATTCGTCCATGCACTCAGTATTTTCCATCCTGATGCACCTATGGATGAAAAAATAGATTTTGCATTTAAGCTCTATGACCTACGACAAACCGGGTTTATTGAGCCAGAGGAAACAATTGCTGATGTTGATCAAGACAATGATGGTAAAATCAGTAAAGAAGATTGGAAAGCTTTTGCTAGTAAAAATCCGTCGCTATTGAAGAACATGACACTTCCTTATTTGAAGGATATCACCACTGTGTTTCCTAGTTTTATTTTCAAATCAGAGGCTGAAATTTGA 672 0.375 MPTDSSDDASRRGIGECIYEVLMPLISVVEVFVFAVTGCFNTYLSLPNNKSAYTAKDFTLLAQETRFTVNEVEALHELFKKISSSLIDDGLIHKAELQLALFQTPNSENLFLDRVFDLFDEKRNGVIEFDEFVHALSIFHPDAPMDEKIDFAFKLYDLRQTGFIEPEETIADVDQDNDGKISKEDWKAFASKNPSLLKNMTLPYLKDITTVFPSFIFKSEAEI* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3558 223 PANTHER CALCINEURIN B 168 222 IPR045198 GO:0005509|GO:0019722|GO:0019900
Tpr1g3558 223 PANTHER CALCINEURIN B 5 168 IPR045198 GO:0005509|GO:0019722|GO:0019900
Tpr1g3558 223 Gene3D - 59 223 - -
Tpr1g3558 223 SUPERFAMILY EF-hand 60 215 IPR011992 -
Tpr1g3558 223 ProSiteProfiles EF-hand calcium-binding domain profile. 167 196 IPR002048 GO:0005509
Tpr1g3558 223 PANTHER CALCINEURIN B-LIKE PROTEIN 10 5 168 - -
Tpr1g3558 223 PANTHER CALCINEURIN B-LIKE PROTEIN 10 168 222 - -
Tpr1g3558 223 SMART efh_1 111 139 IPR002048 GO:0005509
Tpr1g3558 223 SMART efh_1 165 193 IPR002048 GO:0005509
Tpr1g3558 223 ProSitePatterns EF-hand calcium-binding domain. 174 186 IPR018247 -
Tpr1g3558 223 ProSiteProfiles EF-hand calcium-binding domain profile. 107 142 IPR002048 GO:0005509
Tpr1g3558 223 CDD EFh 112 191 IPR002048 GO:0005509
Tpr1g3558 223 Pfam EF hand 169 189 IPR002048 GO:0005509
Tpr1g3558 223 Pfam EF hand 112 132 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3558 Tpr-Chr1 39723492 39726648 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3558 35 222 EF-hand Containing Proteins AT5G55990 51.628 3.05e-70 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3558 K06268 - gmx:100810494 306.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3558 1 39723492 39726648 Tpr1g3558 1 39723492 39726648 ECH