Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3549 ATGGAACGTGCAAGAAGACTCGCAAATCGTGCAACTCTGAAACGTCTTCTTTCAGAGGCGAAACAAAATCGTAACAATGAATCAACAACAATAACAACACCTGTTCCATTTTCACTCTCTGGTTCATCTTCTTCTTCAAGATATGTTTCCTCTGTTTCAAACTCTGTTTTCAGAAACAGAGGATCCAACAAACCAGACAACATTTTTGGAAGAAACAACAATGTTTCACGAGGTGTTGGTGGATTTAACGGTGTTGGGTCTTCAACACAATCTCGATCCATCACTGTTGAAGCTTTGAAACCAAGTGATACATTTCCAAGACGCCATAACTCAGCAACACCAGAAGAACAAACAAAAATGGCTGAATCAGTTGGTTTTGATAACCTTGATTCACTTGTTGATGCAACAGTTCCAAAATCGATTCGTTTGAAGGAAATGAAGTTCAATAATTTCGATGGAGGGTTAACAGAAGGTCAAATGATTGAACACATGAAAGATTTAGCTTCAAAGAACAAAGTTTTCAAATCTTTCATTGGTATGGGATATTATAACACACATGTTCCACCAGTGATTTTGAGGAACATCTTGGAAAATCCTGCTTGGTATACACAGTATACACCTTATCAAGCCGAGATATCGCAAGGTCGTCTCGAATCTTTGTTGAACTTTCAAACATTGATTACTGATCTCACTGGTTTGCCTATGTCAAATGCTTCATTGCTTGATGAAGGTACTGCTGCAGCTGAAGCAATGTCTATGTGTAATAATATTCAAAAGGGTAAGAAAAAAACTTTCATTATTGCTAGTAATTGTCATCCACAAACCATTGATATATGTAAGACAAGAGCTGATGGATTTGAACTCAAAGTTGTGGTGAAAGATCTTAAGGATATTGATTACAAATCTGGTGATGTTTGTGGTGTTCTTGTTCAGTATCCTGGTACTGAAGGTGAGGTTTTGGATTATGGTGAGTTTATTAAGAAGGCTCATGCTAATGAGGTTAAGGTTGTTATGGCAAGTGATTTGTTGGCATTGACTGTGTTGAAACCTCCTGGTGAGTTTGGAGCTGATATTGTTGTCGGTTCCGCTCAGAGATTCGGTGTTCCGATGGGTTATGGTGGTCCTCATGCTGCTTTCTTGGCTACTTCACAAGAGTATAAGAGGATGATGCCTGGAAGAATCATTGGTGTCAGTGTTGATTCTTCTGGTAAGTCAGCTTTGAGGATGGCTATGCAAACTAGGGAGCAGCATATCCGTAGGGATAAGGCTACCAGCAACATTTGCACTGCTCAGGCACTGCTCGCAAACATGGCTGCCATGTATGCTGTATATCATGGACCTGAAGGCCTTAAAGCCATTGCACAAAGGGTTCATGGTCTTGCTGGGGTGTTTGCTCTTGGATTAAAGAAACTTGGAACTGTAGAAGTTCAGGATCATGCCTTCTTTGACACTGTCAAGATTAAGACTTCAAATGCCAAAGCAATTGCAGACGCTGCTGTCAAAAGTGAAATCAATTTGCGAGTTGTAGATGGAAACACCATCACTGTTGCTTTTGATGAAACAACCACATTAGAGGATGTTGATAAGCTTTTCAAAGTTTTTGCTGGTGGCAAGCCTGTCTCATTCACAGCTGCATCTCTTGCACCAGAGTTTCAGAATGCAATTCCTGCTGAATTAGTTAGGGAGAGTCCTTATCTGACACACCCTATCTTTAACACGTACCAAACTGAGCATGAGTTGCTCAGATACATTCATAGGCTACAATCAAAAGATCTCTCACTTGTCCACAGTATGATCCCACTTGGATCTTGTACAATGAAGCTGAATGCAACAACCGAAATGATGCCTGTGACATGGCCTAGCTTTGCTGATCTTCACCCTTTTGCACCAACTGAACAGGCTCAAGGTTATCAGGAAATGTTCAACAATTTGGGTGACCTGTTGTGTACCATCACTGGATTTGACTCCTTCTCTTTGCAACCAAATGCTGGTGCTTCTGGAGAATATGCTGGACTCATGGTTATTCGTGCATATCATTTGTCAAGAGGTGACCACCATCGCAATGTTTGCATTATCCCAGTATCAGCACATGGTACAAATCCTGCTAGTGCTGCTATGTGTGGAATGAAAATTGTCACCATAGGAACTGATGCCAAGGGAAACATCAACATTGAAGAGTTGAAGAAGGCTGCTGAAAAACATAAGGACAACTTATCTGCATTTATGGTTACATATCCTTCAACTCATGGTGTCTATGAAGAAGGTATTGATGATATTTGCAAGCTCATCCATGATAATGGAGGCCAAGTATACATGGATGGTGCCAACATGAATGCACAGGTTGGACTTACAAGCCCAGGTTGGATTGGAGCAGATGTTTGCCATCTCAATCTTCATAAGACATTTTGCATCCCTCATGGAGGAGGAGGCCCTGGCATGGGTCCTATTGGTGTAAAGAAACACTTGGCACCATTTTTACCCTCACACCCTGTGGTGCCAACTGGTGGAATTCCTGCCCCTGAAAATGCTCAACCACTTGGTAGTATCTCAGCTGCGCCTTGGGGATCAGCACTCATATTACCAATCTCATACACATACATTGCCATGATGGGTTCTAAAGGTCTCACTGATGCGTCAAAGATAGCCATTTTGAATGCTAACTACATGGCGAAACGATTGGAGAGTTATTATCCGGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCATGAATTCATTATTGACTTGAGAGGCTTTAAGAATACTGCTGGCATAGAGCCTGAAGATGTTGCGAAACGTCTCATGGACTATGGATTTCATGGACCAACAATGTCATGGCCTGTTCCTGGTACACTCATGATTGAGCCTACTGAAAGTGAAAGCAAGGCTGAGTTAGACAGGTTTTGTGATGCTCTTATTTCCATTAGAAAAGAAATTGCTGAGATTGAGAAAGGAAATGCTGACCTTCACAACAATGTACTTAAGGGAGCCCCTCATCCACCATCACTTCTCATGGCTGATGCATGGACAAAACCATACACCAGGGAGTATGCAGCCTTCCCTGCTCCATGGCTCCGTGGTGCAAAGTTTTGGCCTACCACAGGACGTGTTGATAATGTGTATGGCGACCGCAACCTGATCTGCACCCTTCTCCCAGCATCACAGGCTGTTGAAGAACCAGCTGCTGCGACAGCATAG 3198 0.4228 MERARRLANRATLKRLLSEAKQNRNNESTTITTPVPFSLSGSSSSSRYVSSVSNSVFRNRGSNKPDNIFGRNNNVSRGVGGFNGVGSSTQSRSITVEALKPSDTFPRRHNSATPEEQTKMAESVGFDNLDSLVDATVPKSIRLKEMKFNNFDGGLTEGQMIEHMKDLASKNKVFKSFIGMGYYNTHVPPVILRNILENPAWYTQYTPYQAEISQGRLESLLNFQTLITDLTGLPMSNASLLDEGTAAAEAMSMCNNIQKGKKKTFIIASNCHPQTIDICKTRADGFELKVVVKDLKDIDYKSGDVCGVLVQYPGTEGEVLDYGEFIKKAHANEVKVVMASDLLALTVLKPPGEFGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIIGVSVDSSGKSALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKAIAQRVHGLAGVFALGLKKLGTVEVQDHAFFDTVKIKTSNAKAIADAAVKSEINLRVVDGNTITVAFDETTTLEDVDKLFKVFAGGKPVSFTAASLAPEFQNAIPAELVRESPYLTHPIFNTYQTEHELLRYIHRLQSKDLSLVHSMIPLGSCTMKLNATTEMMPVTWPSFADLHPFAPTEQAQGYQEMFNNLGDLLCTITGFDSFSLQPNAGASGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAAMCGMKIVTIGTDAKGNINIEELKKAAEKHKDNLSAFMVTYPSTHGVYEEGIDDICKLIHDNGGQVYMDGANMNAQVGLTSPGWIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPAPENAQPLGSISAAPWGSALILPISYTYIAMMGSKGLTDASKIAILNANYMAKRLESYYPVLFRGVNGTVAHEFIIDLRGFKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIRKEIAEIEKGNADLHNNVLKGAPHPPSLLMADAWTKPYTREYAAFPAPWLRGAKFWPTTGRVDNVYGDRNLICTLLPASQAVEEPAAATA* 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3549 1065 PANTHER GLYCINE CLEAVAGE SYSTEM P PROTEIN 1 1065 - -
Tpr1g3549 1065 TIGRFAM gcvP: glycine dehydrogenase 108 1049 IPR003437 GO:0004375|GO:0006544
Tpr1g3549 1065 Gene3D - 188 448 IPR015421 GO:0003824
Tpr1g3549 1065 Gene3D - 616 867 IPR015421 GO:0003824
Tpr1g3549 1065 SUPERFAMILY PLP-dependent transferases 108 534 IPR015424 -
Tpr1g3549 1065 Coils Coil 724 744 - -
Tpr1g3549 1065 Hamap Glycine dehydrogenase (decarboxylating) [gcvP]. 99 1056 IPR003437 GO:0004375|GO:0006544
Tpr1g3549 1065 Gene3D Aspartate Aminotransferase, domain 1 177 530 IPR015422 GO:0003824
Tpr1g3549 1065 PANTHER GLYCINE DEHYDROGENASE, DECARBOXYLATING 1 1065 IPR020581 GO:0004375|GO:0006546
Tpr1g3549 1065 CDD GDC-P 577 972 IPR020581 GO:0004375|GO:0006546
Tpr1g3549 1065 CDD GDC-P 157 534 IPR020581 GO:0004375|GO:0006546
Tpr1g3549 1065 SUPERFAMILY PLP-dependent transferases 547 1050 IPR015424 -
Tpr1g3549 1065 Pfam Glycine cleavage system P-protein 550 827 IPR020581 GO:0004375|GO:0006546
Tpr1g3549 1065 Pfam Glycine cleavage system P-protein 108 534 IPR020581 GO:0004375|GO:0006546
Tpr1g3549 1065 Gene3D Aspartate Aminotransferase, domain 1 868 1003 IPR015422 GO:0003824
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3549 K00281 - gmx:100819714 1895.17