Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3542 ATGTTGGAACAATCATTATCAGCCTCATCACCAACATTCTGGGCTGCTCTCTACAGCTGGTTCACTCCCACCATCTTCTTCCTTCTCCTCCAACTTGTCATTGCTACCATTTACATCACTTCAACCCTTGCCAATGCCACCCACAAACAACACCAACAACAAGATCCTAACTTTCCACAAACCCATCTTCATAATCATCAAAACCAACTCTTTAGATCTCCTTCTGTTTTACAAAGACTCAAATCCATCAACTTTTACTCTTACCCTGCTTATAGTAGATCCCAACATGAACAAGAACAACCTCAACAACATCAAACCTACGAAAATGAAACACAAATCCCACAACTTGCTAGATCTCCTTCTGTTTTGCAAAGGCTCAAATCTATAAACCTTTATAGTTACTTTCCTTCTCAACCCTTCACTTCAAAACTCGAAAACACCAACGTTTTCACTCATGAAACTCAACATGTGGAGGTTAGAAAAACAGAGGGAAAAACAGAGGAAGAAACAGAGGAAGATGATGTTTTGGGATATATTAGAGACAACCTAGGAGGAAACAACGAAGAAGAGGGTAATGTTTCTTTAGAAGAAGTTTTCATGAAATTGCAGGGACAAGGTGGTAATTTTGCAAGGACACATTCGGATACTATGCCGGATTCAGGGGAGGTTCCGGTGAAGCTTTCGAGGAAGATGAAGAAATCCGCGAGCAGTAAATCGGCTTTTGGGCATTTCAAGGAAGATGACATTGTGGAGAAGCGTAGGCCGGCCACCGTGAAAGAGGCGAAGGTTGTCCCGACAGTGGATGAGGATGAGTTGGTTGATTCTAAGGCTGATGATTTTATCAACAAGTTTAAGCAGCAGTTGAAGTTGCAGAGGATTGATTCAATTATGAGGTATAAGGATATGGTTAACAAAGGAAGTAGCAAGTAA 930 0.4118 MLEQSLSASSPTFWAALYSWFTPTIFFLLLQLVIATIYITSTLANATHKQHQQQDPNFPQTHLHNHQNQLFRSPSVLQRLKSINFYSYPAYSRSQHEQEQPQQHQTYENETQIPQLARSPSVLQRLKSINLYSYFPSQPFTSKLENTNVFTHETQHVEVRKTEGKTEEETEEDDVLGYIRDNLGGNNEEEGNVSLEEVFMKLQGQGGNFARTHSDTMPDSGEVPVKLSRKMKKSASSKSAFGHFKEDDIVEKRRPATVKEAKVVPTVDEDELVDSKADDFINKFKQQLKLQRIDSIMRYKDMVNKGSSK* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3542 309 PANTHER OS06G0566500 PROTEIN 1 89 - -
Tpr1g3542 309 PANTHER OS06G0566500 PROTEIN 94 308 - -
Tpr1g3542 309 Pfam Cotton fibre expressed protein 271 304 IPR008480 -
Tpr1g3542 309 PANTHER COTTON FIBER (DUF761) 1 89 - -
Tpr1g3542 309 PANTHER COTTON FIBER (DUF761) 94 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3542 Tpr-Chr1 39603084 39604421 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3542 - - mtr:MTR_1g016100 443.351