Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3540 ATGGCACAAACTGAACCGTTACCAAAACCAACCTACATTTCGTTACAACAACTTCAAAAACACAACAAACGTGGCGACGCATGGATCTCCATCGACGGCAAGATCTACGACGTTTCCAAATGGTCCAACCACCATCCCGGCGGCGAACTTCCTCTCTTAAACCTCGCCGGCCAAGATGTCACTGACGCATTCCTAGCTTTTCATCCACCCACTGCTTACAAACATCTTGACAATTTTTTCACCGGCCATTATCTCCGTGACTACGCTGTCTCCGAGGTTTCCCGTGATTACCGGAGTCTTTTCTCTGAACTCACTAAAATGGGTTTGTTTGAAGATAAAGGACATGGTGTTTTGTTCTTACTTTCGTTAATCTCTGTTATGTTCTGTTTCAGTGTTTATGGTGTTCTGTTTTCCGACAGTAAAGTTGTTCATGTTCTTTGTGGTGGGTTAATGGGTTTTTTATGGATTCAAAGTGGTTGGATTGGTCATGATTCTGGTCATTATACGGTTATGAAGGACAAAAAATGGAACCGTTTTGTTCAGATTCTTTCTGGTAATGTTCTTGCTGGTATAAGCATTGAATGGTGGAAATGGAATCATAATGCTCATCATATTGCTTGTAATAGTCTTGATTTTGATCCTGATCTTCAACATTTACCTTTTTTCGTCGTGTCTTCGAAGTTTTTTACTTCACTCACTTCTTGTTTTTATGGTAGAAAAATGAATTTTGATTCATTTGCTAGGTTTTTAGTTAGTTATCAACATTGGAGTTATTATCCTGTTATGTGTTTTGCTAGGTTGAATTTGTTTGCTCAATCTTTTTTCTTGTTGTTGTCTAATAGAAAAGTGCCTAATAGAAAAATGGAACTTTTAGGGTTACTTTTGTTTTGGACTTGGTACCCTTTGTTGGTTTCTTGTTTACCTAATTGGGGTGAAAGGGTTTTGTTTGTGATTGCTAGTTTTTCTGTTACTGGTATTCAACATGTTCAATTCACTTTGAATCATTTTTCGGCTAGTGTTTATGTCGGTCCACCGACGGCTCATGATTGGTTTGAGAAACAAGCTAGTGGGACTCTTGATGTTAAGTGTTCTTCTTGGATGGATTGGTTTCATGGTGGTTTGCAGTTTCAGGTTGAACATCATTTGTTTCCGCGGCTTCCGAGGTGTAATTTGAGGAAGATATCGCCTTTGGTTAAGGATCTGTGCAAAAAACATAATCTTCCTTATACTTGTGTGTCTTTCTGGAAGGCTAATGTGCTTACGATTCAGACGTTGAGGAATGCTGCTTTGCAGGCTCGGGATCTTACTAAACCGGTTCCGAGAAATTTAGTTTGGGAAGCTGTTAATACTCATGGTTAA 1359 0.3915 MAQTEPLPKPTYISLQQLQKHNKRGDAWISIDGKIYDVSKWSNHHPGGELPLLNLAGQDVTDAFLAFHPPTAYKHLDNFFTGHYLRDYAVSEVSRDYRSLFSELTKMGLFEDKGHGVLFLLSLISVMFCFSVYGVLFSDSKVVHVLCGGLMGFLWIQSGWIGHDSGHYTVMKDKKWNRFVQILSGNVLAGISIEWWKWNHNAHHIACNSLDFDPDLQHLPFFVVSSKFFTSLTSCFYGRKMNFDSFARFLVSYQHWSYYPVMCFARLNLFAQSFFLLLSNRKVPNRKMELLGLLLFWTWYPLLVSCLPNWGERVLFVIASFSVTGIQHVQFTLNHFSASVYVGPPTAHDWFEKQASGTLDVKCSSWMDWFHGGLQFQVEHHLFPRLPRCNLRKISPLVKDLCKKHNLPYTCVSFWKANVLTIQTLRNAALQARDLTKPVPRNLVWEAVNTHG* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3540 452 CDD Delta6-FADS-like 145 407 - -
Tpr1g3540 452 Pfam Fatty acid desaturase 147 411 IPR005804 GO:0006629
Tpr1g3540 452 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 10 94 IPR001199 -
Tpr1g3540 452 PANTHER DELTA(8)-FATTY-ACID DESATURASE 2 11 451 - -
Tpr1g3540 452 PANTHER FATTY ACID DESATURASE 2 11 451 IPR012171 GO:0016491
Tpr1g3540 452 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 6 87 IPR036400 -
Tpr1g3540 452 Pfam Cytochrome b5-like Heme/Steroid binding domain 15 83 IPR001199 -
Tpr1g3540 452 SMART Cyt_b5_2 13 85 IPR001199 -
Tpr1g3540 452 PIRSF FA_sphingolip_des 1 440 IPR012171 GO:0016491
Tpr1g3540 452 Gene3D - 3 84 IPR036400 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3540 Tpr-Chr1 39592096 39593981 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3540 9 452 Lipid Metabolism Gene Families AT3G61580 64.865 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3540 K21737 - ini:109158372 758.444