Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3536 ATGGAGAACATTACAAAGGATGCATCCCCAAAAAGTGTCAATTCTGAACAGCCATACAGAACTGGGTACCACTTTCAGCCCCTCAAAAATTGGATGAATGATCCTAATGGACCAATGTACTATAAAGGAGTTTACCATTTCTTCTACCAACGTAACCCTGATGGAGCAACCTTTGGTCATGAGAAAATGGTATGGGGTCATTCTGTATCAAAAGATCTCATAAATTGGACTCATCTGAATGATGCTATTGAACCAAGTTGTATTGGTGACTCAAAGAGTTGCTTCTCAGGCTCAGCCACAATACTTCCAGGAGAAAAACCTCTTATGTTGTATACAGGAATTGATGGAAAAGGACACCAAGTTCAAAACTTAGCTATGCCAAAGAATCTATCTGATCCTTACTTAAGGGAATGGGAGAAACACCCTCAAAATCCTTTGATGACTGCACCTAGTGGAGTTGAAGAGAATGAATTCAGAGATCCATCAACTGCATGGCAAGGAAAAGATGGAAAATGGAGGGTAATCATTGGTGCTCAAAAAGGTGATCAAGGAAAAGCTATTCTATACAAAAGTGAGGATTTTGTCAATTGGATTGTTGATCCTAATCCATTCTATGCAACAGATGGTACTGGAGTTTGTGAATGTCCAGAATTTTTTCCTGTTTATATCAATAGCACAAATGGAGTGGATACAACTATGGAAAATTCAAGTGTTAGACATGTATTGAAGATAAGCTATTATCGTCGACATCTTGATTTCTACTTCATTGGAAAATATGCATCTGATTCTGATCAGGAGAAATTTATTCCTGATGCAAAATATACAGAAACTTACAAAGACTTAAGATTTGACTATGGCCTTTATTATGCTTCAAAGTCATTTTTTGACTATGCTACAAATAGGAGAATATTATGGGGATGGGTGGAAGAACATGACTCAAAACAAGATTCCATTGATAAAGGTTGGGCTGGTTTACAGACAATTCCAAGGAAAATTTGGCTTGATAAAAGTGGAAAGCAATTAATTCAATGGCCAATTGAAGAGCTTGAAAAACTACGTGACAAGCAAATCAGTATCACAGGAGAGACACTCCTAAGTGGATCAATTCTTGAAGTAAAAGGTGTCACTGCATCTCAGGCTGATGTGGAAGTCTTGTTTGAGCTACCTGATCTACAAAGTGCTGAGTTGCTAGAACCAAGTGAAGTTGATCCCCAAATACTTTCTGCTGAACAATATGCATCAAGAAAAGGCATGATAGGACCGTTTGGTTTGCAAGTTTTAGCATCAAAAGACATAACAGAAAAGACTACAATATCTTTCCGAATATATAGAGTCGTCGATAAATATATATGCTTGATGATAAGTGACCCAAGCAGGTCTTCATTGAGGCAGGGTCTTACTAAGCCAATATATGCAACTGTCTTTGACATAGATCCCAATATCAAAACAATTTCACTTAGAACCTTGATTGATCGGTCTATTATTGAGAGTTTTGGAGATGGAGGAAGAGCTTGCATAACAAGTAGAGTTTATCCCTTATTGGCTATAGAGAAAGATGCTCATCTTTATGTATTCAATGATGGAAATCAGAGTGTGGTTATCTCACAACTTAATGCTTGGATCATGAAGCAAGCAGAGTTTGCAACAGAAAGCTGA 1656 0.375 MENITKDASPKSVNSEQPYRTGYHFQPLKNWMNDPNGPMYYKGVYHFFYQRNPDGATFGHEKMVWGHSVSKDLINWTHLNDAIEPSCIGDSKSCFSGSATILPGEKPLMLYTGIDGKGHQVQNLAMPKNLSDPYLREWEKHPQNPLMTAPSGVEENEFRDPSTAWQGKDGKWRVIIGAQKGDQGKAILYKSEDFVNWIVDPNPFYATDGTGVCECPEFFPVYINSTNGVDTTMENSSVRHVLKISYYRRHLDFYFIGKYASDSDQEKFIPDAKYTETYKDLRFDYGLYYASKSFFDYATNRRILWGWVEEHDSKQDSIDKGWAGLQTIPRKIWLDKSGKQLIQWPIEELEKLRDKQISITGETLLSGSILEVKGVTASQADVEVLFELPDLQSAELLEPSEVDPQILSAEQYASRKGMIGPFGLQVLASKDITEKTTISFRIYRVVDKYICLMISDPSRSSLRQGLTKPIYATVFDIDPNIKTISLRTLIDRSIIESFGDGGRACITSRVYPLLAIEKDAHLYVFNDGNQSVVISQLNAWIMKQAEFATES* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3536 551 ProSitePatterns Glycosyl hydrolases family 32 active site. 24 37 IPR018053 GO:0004553|GO:0005975
Tpr1g3536 551 Gene3D Glycosyl hydrolase domain; family 43 28 357 IPR023296 -
Tpr1g3536 551 Pfam Glycosyl hydrolases family 32 C terminal 348 540 IPR013189 -
Tpr1g3536 551 SUPERFAMILY Concanavalin A-like lectins/glucanases 345 544 IPR013320 -
Tpr1g3536 551 SUPERFAMILY Arabinanase/levansucrase/invertase 15 346 IPR023296 -
Tpr1g3536 551 CDD GH32_Fruct1-like 30 334 - -
Tpr1g3536 551 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV6 12 549 - -
Tpr1g3536 551 Pfam Glycosyl hydrolases family 32 N-terminal domain 24 345 IPR013148 -
Tpr1g3536 551 Gene3D - 358 542 - -
Tpr1g3536 551 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 12 549 - -
Tpr1g3536 551 SMART glyco_32 24 502 IPR001362 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3536 Tpr-Chr1 39565343 39571565 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3536 7 545 Glycoside Hydrolase AT3G13784 51.460 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3536 K01193 - gmx:100806220 820.076