Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3535 ATGAAAAACTTTGCAGCACAAGTATTGCTTGTGATCATTTATTTTCTGATAAACAGTAGAAATGGAATTGAGGCATCAACACATGATAACAATATTGATCATATCAAGTATAGGATACCTGAAGAACAACCTTACAGAACTTCTTATCATTTTCAGCCTCCACAAAATTGGATGAACGATCCAAATGCCCCTATGTACTACAAAGGTGTTTACCACCTTTTCTACCAACACAATCCTTATGCAGCAACATTTGGTGATATAATCATATGGGCTCATTCTGTATCCTATGATCTCATCAATTGGATTCATCTGAATAATGCTCTTGAACCAAGTGATTCCTTTGACATCAACAGTTGTTGGTCTGGTTCAGCCACTATACTCCCAGGTGAAAAGCCTGCAATTTTGTACACAGGAATTGATCACAATAAACATCAAGTTCAAAACTTAGCTATACCAAAGAATATATCAGACCCTTTCTTAAGAGAATGGCAAAAACACCCTCAAAATCCTGTGATGACTCCACCTAGTGGAGTAGAAGAGAATAATTTCAGAGACCCTTCAACTGCATGGCATGGAAAAGATGGAAAATGGAGAGTAATCATCGGTGCTCAAAATGGCGATGAAGGAAAAACTATACTTTACCAAAGTGAGGATTTTGTTAATTGGACGGTGAATCCGAATCCGTTTTTTGCAACAGATAATACTGGAGTTTGTGAATGTCCAGATTTTTTTCCTGTGTATATCAATAGCACAAATGGAGTTGATACATCTGTGGAAAATTCGAGTGTTAGACATGTTTTGAAGATAAGTTATCTAACTAAACAGCATGACTACTATTTTGTTGGTAGATATGTTTCTGGTCAGGAAAAGTTTAATCCTGATGTAACATTTACAGGAACTAGTAAAGATTTAAGGTATGATTATGGTAAATTTTATGCTTCAAAGTCTTTTTTTGACTATGCTAAGAATAGGAGAATATTGTGGGGTTGGGTGAATGAGTCAGACACTACACAAGATGATATTGAGAAAGGATGGGCTGGTTTACAGACAATTCCAAGGCAAGTTTGGCTTGATAAAAGTGGGAAGAGATTAATACAGTGGCCAATTGAAGAAGTAGAAAATTTAAGAAACAAACAAATCAGTATTATAGGAAAGAAACTTGAGGGTGGATCAACTCTTGAAATCTCAGGCATTACTGCATCACAGGTTGATGTAGAAGTGTTGTTTGATCTACCTGAACTAGAAAACGGCGAGTGGTTAGAAGATCCAAGTGAAGTTGATCCTCAACTACTATGTAGCAAACAATATGAATCAAGAAGTGGCAAAATAGGGCCATTTGGTTTGTTAGCTTTAGCTTCAAAGGATCTCACAGAACAAACTGCAGTGTTTTTCCAAATATATAGAACTTCCAATAGATATGTATGTCTAATGTGCAGTGACCAAAGCAGGTCTTCATTGCGAAAGGACCTTGATAAAACAACATATGGAACTATCTTTGACATAGATTCCAATCTCAAAACGATTTCACTTAGAAGCTTGATTGACAAGTCCATTATTGAGAGTTTTGGAGATGGAGGGAAAGCTTGCGTAACAAGTAGAGTTTATCCCTTATTGGCTATAGAGAAAGATGCTCATCTTTATGTATTCAACAATGGAAGCCAAAGTGTGGTTATCTCACAGCTTAACGCTTGGAGCATGAAGCAAGCAGAGATAGGTCATAAGGGAAATATAAATTGTGCCTAA 1743 0.3649 MKNFAAQVLLVIIYFLINSRNGIEASTHDNNIDHIKYRIPEEQPYRTSYHFQPPQNWMNDPNAPMYYKGVYHLFYQHNPYAATFGDIIIWAHSVSYDLINWIHLNNALEPSDSFDINSCWSGSATILPGEKPAILYTGIDHNKHQVQNLAIPKNISDPFLREWQKHPQNPVMTPPSGVEENNFRDPSTAWHGKDGKWRVIIGAQNGDEGKTILYQSEDFVNWTVNPNPFFATDNTGVCECPDFFPVYINSTNGVDTSVENSSVRHVLKISYLTKQHDYYFVGRYVSGQEKFNPDVTFTGTSKDLRYDYGKFYASKSFFDYAKNRRILWGWVNESDTTQDDIEKGWAGLQTIPRQVWLDKSGKRLIQWPIEEVENLRNKQISIIGKKLEGGSTLEISGITASQVDVEVLFDLPELENGEWLEDPSEVDPQLLCSKQYESRSGKIGPFGLLALASKDLTEQTAVFFQIYRTSNRYVCLMCSDQSRSSLRKDLDKTTYGTIFDIDSNLKTISLRSLIDKSIIESFGDGGKACVTSRVYPLLAIEKDAHLYVFNNGSQSVVISQLNAWSMKQAEIGHKGNINCA* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3535 580 CDD GH32_Fruct1-like 56 357 - -
Tpr1g3535 580 SUPERFAMILY Concanavalin A-like lectins/glucanases 368 568 IPR013320 -
Tpr1g3535 580 Gene3D - 382 566 - -
Tpr1g3535 580 ProSitePatterns Glycosyl hydrolases family 32 active site. 50 63 IPR018053 GO:0004553|GO:0005975
Tpr1g3535 580 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV6 40 574 - -
Tpr1g3535 580 Pfam Glycosyl hydrolases family 32 N-terminal domain 50 368 IPR013148 -
Tpr1g3535 580 Gene3D Glycosyl hydrolase domain; family 43 55 381 IPR023296 -
Tpr1g3535 580 SMART glyco_32 50 526 IPR001362 GO:0004553|GO:0005975
Tpr1g3535 580 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 40 574 - -
Tpr1g3535 580 Pfam Glycosyl hydrolases family 32 C terminal 371 565 IPR013189 -
Tpr1g3535 580 SUPERFAMILY Arabinanase/levansucrase/invertase 42 369 IPR023296 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3535 Tpr-Chr1 39557866 39561665 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3535 65 571 Glycoside Hydrolase AT5G11920 58.285 0.0 597
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3535 K01193 - gmx:100777487 954.896