Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3520 ATGAATCTCTGGTGTTGCTTATGGTTCAATCGGAAGAAAGAAAAAGAAGAAGAAGAGGAAGAGGAAGAGGAAAATTGTAATTTCTTTGAACCTATGAACAACGACGAGGATATTTTCGGAAAAGCTTCTGATGATGGAGATGAATCCCAACCGAGAAATTTTGAGCCTAATTTTTTTCAAGATTTTGCTAAAGAATCGTTTGGTTCGTGGCCGGTTACACGGCGGTCTGAGGGTGAAAGTAGCTCTGTTAACGCCGGTTTAGTTCCGGTTTCCGGTCCGGAAAGTCCTGTAGCTGACGAGAACCGCGATTCGTCTCACAAGCGCGCTAAATTCTACAACGAGGGTAACTTTGATGACCTAGCTTCTTCAAGTAAAGTGAAATACTCTATGGATTATGAAGAATTTGACGTTTCTCATGGACCTAATAATGTTGCTTGTTATGATGATTTTGCGTTGGGGTGTATTCATGAGGATGGTAATTGTGTGGAAAACGGTGAAGGGAATGATTCAGAACTAGAAGATCAAGAGGTTGTCAGGATGGATCTTACGGATGATCTGTTGCATATGGTTTTCTCATTTCTGGATCAGACCAATCTCTGTAGAGCTGCTAGAGTTTGTAAGCAGTGGCGATCTGCTAGTACTCATGAAGATTTTTGGAGGAGTTTGAATTTTGAAAATCGGGACATATCTGAAGAACAATTTGAGGACATGTGTAGGCGTTATCCTAATGCTACAGCATTGAGCATATCAGGACCTTCGATTTATTCGCTCGTCATGAAGGCAATCTCTATGTTAAGGAATCTTGAGGTTTTAACATTGGGAAGAGGACAGATAGGGGATGCTTTTTTTCTTGCTCTACCTGAGTGTTCTATGTTGAGAAAATTGAATATCAGTGATTCTACACTCGGCAATAGTATTCAGGAGATATCTGTCGTTCATGAGAGACTGTGCCATCTTGAATTAACAAAATGTCGTGTCATGCGAATACAAGTCAGGTGCCCGCAACTTAAAACTATGTCTCTGAAGCGCAGTAACATGGCACAAGTTGTGCTGAATTGTCCTCTTTTGCATGAACTTGATATAGGCTCTTGCCACAAACTTCCTGATGCTGCAATTCGCGCTGCTGCAACTTCATGCCCTCAACTAGTGTCACTGGACATGCGTAATTGTACTTGTGTCAGCGATGAAACACTGCGTGAAATAGCACAGCATTGTCCTAATCTTGGTTTTCTTGATGCGTCATACTGCCCAAACATATCTTTGGAGTCTGTTCGACTCCCAATGTTGACAATTCTACGGCTTCATAGCTGTGAGGGCATCACTTCTGCATCAATGGCTGCAATAGCACACAGTTCTATGTTAGAGGTTTTGGAGCTTGACAATTGTGGTCTATTGACGTCGGTTTCGTTGGATCTTCCTCGTTTGCAAAATATTAGATTGGTGTACTGTCGCAAATTAGCAGATTTGAACTTGAGGGCTATATCGCTTTCTTCTATACAAGTGTCAAACTGCTCTGTACTTCACCGGATCAATATCACTTCAAATTCACTTCAAAAATTAGCACTGCAAAAGCAGGATAGCTTAACTACATTAGCACTGCAATGCCAATCTTTACAAGAAGTGGACCTCTCTGAGTGTGAATCTTTGGCAAACTCTGTATGTGATGTTTTTAGTGACGGTGGAGGATGCCCTATGTTGAAATCACTAGTTCTTGATAATTGTGAGAGCTTGACTTCAGTTCGCTTCATCAGCACCTCGTTAATCAGTCTTTCCCTTGGCGGTTGCCGAGCAATTACTACTCTTGAGCTTACCTGCCCTAATCTTGAGAAGGTCATTTTGGATGGTTGTGATCATTTGGAAAATGCATCATTTTGCCCTGTTGGTCTTCGATCTCTCAATTTAGGAATATGCCCAAAATTAAACATACTCCGCATTGAAGCGATGTTAATGGTCTCACTTGAGTTGAAAGGATGCGGTGGACTGTCTGAAGCATCCCTTAATTGTCCTCTCTTGACATCTCTGGATGCTTCCTTTTGCAGCCAACTCACTGATGACTGCTTGTCTGCAACAACCCGTGCATGTCCTCTAATTGAGTCATTGATATTGATGTCATGTCCATCAATTGGGTTAGAAGGACTCTGTTCCCTGCATTGGCTCCCAAATTTAGCCCTGCTTGATTTATCATACACATTCTTGGTAAATCTGCAGCCTGTTTTTGACTCCTGTTCACAGCTAAAGGTATTAAAGTTGCAGGCATGCAAATATCTCACCGACTCATCACTTGAACCTCTTTACAAGGGGGGTGCTTTGCCAGCACTTCAGGAGTTGGACTTGTCTTATGGAACTTTGTGTCAGAAAGCCATTGAAGAGCTTCTTTCTTGCTGCACTCACCTTACACGTGTGAGTTTGAATGGCTGTGTGAATATGCATGATTTAAACTGGGGGTACAGTCGAGGGAAGTTTCCTGAGTTACCTGGAATAAGCATCCTATCCACCGCAAGTTCCTATGATAATATCCATGTGTCAAATGAGCAACCCACTCGATTACTTCAGAACCTAAACTGTGTCGGCTGTCCAAATATAAGGAAGGTTTTCATCCCATCAACCGCAAACTGTTCCCATTTATTATTTTTAAACCTTTCTCTGTCAGCTAATTTGAAGGAGGTTGATGTTGCTTGTCTCAACCTATGCTGGCTCAATTTAAGCAACTGTTCGTCATTGGAAGTTTTGAAGCTAGATTGTCCGAGATTGACCAATCTATTCCTTCAGGCGTGCAATATTGACGAGGAAGCTGTTGAAGCTGCTATATCAAGATGCACTATGTTGGAGACTCTTGATGTTCGCTTTTGTCCTAAGATAAGCTCAATGAGCATGGGAAGGCTCCGTGCAGCATCTTCTGGTTTGAAGCGTATATACAGCAGTTTGTCATCTTCATCAGCGTGA 2943 0.421 MNLWCCLWFNRKKEKEEEEEEEEENCNFFEPMNNDEDIFGKASDDGDESQPRNFEPNFFQDFAKESFGSWPVTRRSEGESSSVNAGLVPVSGPESPVADENRDSSHKRAKFYNEGNFDDLASSSKVKYSMDYEEFDVSHGPNNVACYDDFALGCIHEDGNCVENGEGNDSELEDQEVVRMDLTDDLLHMVFSFLDQTNLCRAARVCKQWRSASTHEDFWRSLNFENRDISEEQFEDMCRRYPNATALSISGPSIYSLVMKAISMLRNLEVLTLGRGQIGDAFFLALPECSMLRKLNISDSTLGNSIQEISVVHERLCHLELTKCRVMRIQVRCPQLKTMSLKRSNMAQVVLNCPLLHELDIGSCHKLPDAAIRAAATSCPQLVSLDMRNCTCVSDETLREIAQHCPNLGFLDASYCPNISLESVRLPMLTILRLHSCEGITSASMAAIAHSSMLEVLELDNCGLLTSVSLDLPRLQNIRLVYCRKLADLNLRAISLSSIQVSNCSVLHRINITSNSLQKLALQKQDSLTTLALQCQSLQEVDLSECESLANSVCDVFSDGGGCPMLKSLVLDNCESLTSVRFISTSLISLSLGGCRAITTLELTCPNLEKVILDGCDHLENASFCPVGLRSLNLGICPKLNILRIEAMLMVSLELKGCGGLSEASLNCPLLTSLDASFCSQLTDDCLSATTRACPLIESLILMSCPSIGLEGLCSLHWLPNLALLDLSYTFLVNLQPVFDSCSQLKVLKLQACKYLTDSSLEPLYKGGALPALQELDLSYGTLCQKAIEELLSCCTHLTRVSLNGCVNMHDLNWGYSRGKFPELPGISILSTASSYDNIHVSNEQPTRLLQNLNCVGCPNIRKVFIPSTANCSHLLFLNLSLSANLKEVDVACLNLCWLNLSNCSSLEVLKLDCPRLTNLFLQACNIDEEAVEAAISRCTMLETLDVRFCPKISSMSMGRLRAASSGLKRIYSSLSSSSA* 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3520 980 ProSiteProfiles F-box domain profile. 176 222 IPR001810 GO:0005515
Tpr1g3520 980 PANTHER OS10G0396666 PROTEIN 99 939 IPR044703 GO:0010252|GO:1905393
Tpr1g3520 980 Gene3D Ribonuclease Inhibitor 216 326 IPR032675 -
Tpr1g3520 980 MobiDBLite consensus disorder prediction 37 51 - -
Tpr1g3520 980 Gene3D Ribonuclease Inhibitor 734 824 IPR032675 -
Tpr1g3520 980 Pfam F-box-like 184 224 IPR001810 GO:0005515
Tpr1g3520 980 PANTHER OS10G0396666 PROTEIN 99 939 - -
Tpr1g3520 980 Gene3D Ribonuclease Inhibitor 650 733 IPR032675 -
Tpr1g3520 980 Gene3D Ribonuclease Inhibitor 521 642 IPR032675 -
Tpr1g3520 980 MobiDBLite consensus disorder prediction 13 55 - -
Tpr1g3520 980 MobiDBLite consensus disorder prediction 73 88 - -
Tpr1g3520 980 Gene3D - 180 215 - -
Tpr1g3520 980 SMART LRR_CC_2 694 719 IPR006553 -
Tpr1g3520 980 SMART LRR_CC_2 353 378 IPR006553 -
Tpr1g3520 980 SMART LRR_CC_2 914 938 IPR006553 -
Tpr1g3520 980 SMART LRR_CC_2 668 693 IPR006553 -
Tpr1g3520 980 SMART LRR_CC_2 535 552 IPR006553 -
Tpr1g3520 980 SMART LRR_CC_2 472 497 IPR006553 -
Tpr1g3520 980 SMART LRR_CC_2 605 630 IPR006553 -
Tpr1g3520 980 SMART LRR_CC_2 742 767 IPR006553 -
Tpr1g3520 980 SMART LRR_CC_2 426 451 IPR006553 -
Tpr1g3520 980 SMART LRR_CC_2 939 974 IPR006553 -
Tpr1g3520 980 SMART LRR_CC_2 289 312 IPR006553 -
Tpr1g3520 980 SMART LRR_CC_2 379 404 IPR006553 -
Tpr1g3520 980 SMART LRR_CC_2 795 835 IPR006553 -
Tpr1g3520 980 SMART LRR_CC_2 563 593 IPR006553 -
Tpr1g3520 980 SUPERFAMILY RNI-like 201 468 - -
Tpr1g3520 980 Gene3D Ribonuclease Inhibitor 327 423 IPR032675 -
Tpr1g3520 980 Gene3D Ribonuclease Inhibitor 424 519 IPR032675 -
Tpr1g3520 980 SUPERFAMILY RNI-like 426 706 - -
Tpr1g3520 980 SMART fbox_2 182 222 IPR001810 GO:0005515
Tpr1g3520 980 SUPERFAMILY RNI-like 694 955 - -
Tpr1g3520 980 MobiDBLite consensus disorder prediction 73 106 - -
Tpr1g3520 980 Gene3D Ribonuclease Inhibitor 825 979 IPR032675 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3520 - - gmx:100782842 1429.08