Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3516 ATGGGAGAGGCTCCAGAAGTGTTGTATGTTAATGGTTCCTCAAAAGTTGTTCCTGAAACTCAACAAAACCATGTCAACAACGTTGTTGGTTCTGATACATGGTATGAGGAAGTCATCGATGATGATCTCAAATGGTCTTTTAAACTTAACAGTGTGCTCCATAAAGCCATTAGTGAATACCAGGACATTGCTCTCTTAGATACAAAGCGTTTTGGAAAGGCCTTGGTGCTTGATGGGAAGATGCAGAGTGCTGAAGCAGATGAATTCATTTATCATGAATGCTTGATTCATCCTCCTCTTTTATGCCATCCCAACCCAAAGACAGTGTTTATAATGGGAGGTGGTGAAGGTTCTGCAGCTAGAGAAGCTCTCAAACACAAGTCAATAGACAAAGTTGTTATGTGTGATATTGACAAGGAGGTGGTAGATTTCTGCCGAAAATACCTGGTTGCTAATAAGGAGGCATTTGCTAATAAGAAGCTCGACCTTGTCATCAACTGTGCCAAGGCTGAATTAGAGAAGAGAAAGGAGAAGTATGATGTGATTGTTGGAGATTTAGCTGACCCACTTGAAGATGGGCCTTGTTATCAACTCTACACTAAGGACTTCTATGAGAAAGTTGTGAAGCCCAAACTCACTAAAAATGGCATTTTTGTCACACAGGCTGGACCAGCAGGTATCTTCTCACACAAAGAGGTTTTCACCTCTATACACAACACTGTAAAACAGGTCTTCAAATATGTGGTGGCATACTCTACTCATGTACCATCATTTGCTGATTCATGGGGATGGGTTATGGCTTCAGACAAACCAATATTGATTGATGCTGTTGAAATGGACAAAAGAATTGAAGCAAGAATTGATGGAAAATTGCTCTATCTAGATGGTGTTTGGTTCCATTCATCTACCATCATGAACAAGGCTGTGTCCAAATCGCTGCAGAATGAAACTCATGTGTACACTGAAGATAATGCTAGATTTATTCCTGGACATGGCATACTCTAA 1005 0.405 MGEAPEVLYVNGSSKVVPETQQNHVNNVVGSDTWYEEVIDDDLKWSFKLNSVLHKAISEYQDIALLDTKRFGKALVLDGKMQSAEADEFIYHECLIHPPLLCHPNPKTVFIMGGGEGSAAREALKHKSIDKVVMCDIDKEVVDFCRKYLVANKEAFANKKLDLVINCAKAELEKRKEKYDVIVGDLADPLEDGPCYQLYTKDFYEKVVKPKLTKNGIFVTQAGPAGIFSHKEVFTSIHNTVKQVFKYVVAYSTHVPSFADSWGWVMASDKPILIDAVEMDKRIEARIDGKLLYLDGVWFHSSTIMNKAVSKSLQNETHVYTEDNARFIPGHGIL* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3516 334 Pfam Spermine/spermidine synthase domain 88 266 - -
Tpr1g3516 334 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 32 269 IPR030374 -
Tpr1g3516 334 PANTHER THERMOSPERMINE SYNTHASE ACAULIS5 19 332 - -
Tpr1g3516 334 PANTHER SPERMINE SYNTHASE 19 332 - -
Tpr1g3516 334 Hamap Polyamine aminopropyltransferase [speE]. 33 314 IPR001045 GO:0003824
Tpr1g3516 334 Gene3D Spermidine synthase, tetramerisation domain 32 84 IPR037163 -
Tpr1g3516 334 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 32 313 IPR029063 -
Tpr1g3516 334 Pfam Spermidine synthase tetramerisation domain 34 85 IPR035246 -
Tpr1g3516 334 Gene3D Vaccinia Virus protein VP39 85 332 IPR029063 -
Tpr1g3516 334 CDD AdoMet_MTases 113 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3516 Tpr-Chr1 39325707 39329841 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3516 K18787 - gmx:100784972 585.874