Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3510 ATGGATTTCAGATTGATGGGTTTGGATTCTCACCCAGTTCTTCATTCTCTGATGGATCTTTCAGACGAAACTTCTTCCGACAAGGCATCACACAATGCTCCGACATGGTGCTACGTGAGAGACGCAAAGGCAATGGCTGCTACTCCGGCGGACGTGAAGGAATATCCGAATTCGTACTTGTTTGTGATTGATATGCCGGGGTTGAAATCTGGTGACATAAAGGTTCAGGTTGAAGATGATAATGTGCTTGTGATAAGTGGTGAGAGGAAGAGGGAAGAAGAGAAAGAAGGTGTTAAGTATTTGAGAATGGAGCGAAGGATTGGAAAGTTTATGAGGAAATTTGTTCTTCCTGAGAATGCTAATACTGATGCTGTTTCTGCTGTGTGTCAAGATGGGGTGCTAACTGTTTCTGTTGAGAAATTGTCTCCTCCTCAGCCTAAGAAGCCAAGAACCATTGAGGTTAAGATTGCTTGA 474 0.4346 MDFRLMGLDSHPVLHSLMDLSDETSSDKASHNAPTWCYVRDAKAMAATPADVKEYPNSYLFVIDMPGLKSGDIKVQVEDDNVLVISGERKREEEKEGVKYLRMERRIGKFMRKFVLPENANTDAVSAVCQDGVLTVSVEKLSPPQPKKPRTIEVKIA* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3510 157 Pfam Hsp20/alpha crystallin family 51 155 IPR002068 -
Tpr1g3510 157 SUPERFAMILY HSP20-like chaperones 29 149 IPR008978 -
Tpr1g3510 157 PANTHER 17.1 KDA CLASS II HEAT SHOCK PROTEIN-LIKE 13 156 - -
Tpr1g3510 157 Gene3D - 10 156 IPR008978 -
Tpr1g3510 157 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 41 155 IPR002068 -
Tpr1g3510 157 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 13 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3510 Tpr-Chr1 39300145 39300899 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3510 K13993 - gmx:100813195 246.899