Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3508 ATGATGATGAAACCAAAGTTTGATTCTGAAAATAAAGATAATGCTTATGATGTTGGTGAAATTGAAACTGAAACTGATTGGAAAAATGGTCAACAAGAATTACTTCATGATATTCAAGAATTAAGCAATGCACTTTACTTGCAAAATACCCCTTTTAAGCCTTCCACACTTTCCTCACTCCATAATAGATCTAAGTCTGCTGAAAAAACCCGTTTGTCGAAATCTCAACTTAACTCAACGCCGAGATTTGTAAGTGAGGATCTGTTGATAAGGGACAAGAAGTTGTTGTCTTTAGGATGGAATTGGAAGAAGCCCTTGAAAGCTTTGACTCATATCGGTTCTCGAAAGTTTGATTGTCGCTTTAAGCTTCATGTCCATTCAATTGAGGGACTACCTTTGAGTTTTGACGGCGTTAGATTATCTGTGCATTGGAAAAGGAAAAACAGCATTTTGCAGACGTGTCCGTCAAGGGTATTGCAGGGTTCTGCAGAGTTCGATGAAACTTTGATACATAGATGTACTGTTTATGGTAGCCGCACTGCGTCTGGTCATGCTGTCAAGTATGATTCCAAGTGTTTCTTGATTTATGCGTCTATTGTAGGGGAACCTGGATATGACATTGGGAAATATCAAGTTGATCTCACAAGGCTTTTGCCTCTGAGTTTAGATGAGTTATGGGGTGATAAAAGTTCGGGGAAATGGAGTACAAGTTTTAGTTTGGTTGGAAAAGCTTTAGGAGCTAGAATAAATGTTAGTTTCAGTTATCAAGTTATGAAGGATGAATTAATGAGATTTGGTGGTTGTAATGGGAATGTTGTTAGGCTTATTAACTTGAAGACGGGTCCAAGCAGCCTCGACAATGTTGTTGGTTACAGTCCCAACAATAGAGACATAAAGGTTCGGCAGAGTCAAAATGACATGGTGTTATCGAATGAAGCAGTGATGAATTCTGGCTCAGGCTTTTCTAAATCAATCACTTTCCTATATCAAAAGCTTGATGAGGGGAACTTAGATAATTCAACATGGGCAGACTCAGAGTCATCTCAAGGATCAAATCTATATGTGTCTGATGACACTGAATTTTCCATCAGTGAACAAGGAGTAGAAATATCAGAAGAGGATTCGTTCGAATTTGATCAAACAGGAATTCAAGTAGTTGATATGTCTACAGTTGAAATCATTAATGTGGATGAGATTATTAAGGATGCTGACACGTTTGTTGACAAGAACGCAAGATGTGATTCACTGGATACTGTATACTCTAGGAATGTAAATGTTGATATGGCAGATAACATCAAGCATAGATTCAGTTTTTCATCCATCAATCTACCGTGCACGAAGGTTGAGGATTCAGTTCCTGAGACATCAGAGCTTCTTGACCAAGAAGAACACTACTTGAGAGTTGAATCAAATTATAAAGCACATAAAAAGTCACATAGCTTGGATGACATCATTGACTCTGTCACGAGTGATTTCTTAAAGACACTGGCATTGGAGAGTGATTCGTTTCGCTCAAGCTCTGATGCTGATCCCTTGTCTCCTAGAGAGCATCTTTTAAGACAGTTTGAAAGTGAGGCTCTAGCTTCAGATAACTTCGCTTTTGATTTTGATGCAATCGAGGAGGAATTGGGGGAAGATACACTTGGACACAACTGTGGGAATTATGCCGTGGATTCTGATTTATCTTTACTTATTGGTGCGGCCGAAGAGGAGTATGAAAGGGAAAATCAATCATTAATACAGAGAAGGAAGGCCAAGATTATTGAAGATCTGGAAACTGATACATTAATGCAACAATGGGGTTTAGATGAGAGGGACTTTCAAAATTCTCCAAGAACATGGGCTGGTGGATTTGGAAGTCCAATTGAACTATCCGACGAAGAACCATCCATATTACCATCAATTGGTGAAGGGCTTGGTTCGTTTGTTCAAACAACAAATGGTGGCTTTTTGAGGTCCATGTGTCCTTCCCTCTTCAAAAATGCTAAGAATCGTGGGAACCTCATCATTCAAGCATCTAATCCGGTTGTTCTACCAGCGAAAATGGGTAACGATATATTGGATATACTTCTGCACATGGCATCTGCTAGAGCTCAAGAGCTACATGATCACATCTCTAAATTAATGCCTTTGCAAGATATCACTGGAAAATCCATTAAGCATATTGTGTCGGATGCTGACACCAACACAGAAGCTCCCGGAAGGAAGGGATCATGGCAGCACGATTTCTTTGAAGAATTTCAAAGTAGTTATTTAACAGATAAAGACCAATGCTTGGACTCTGTGTCTCTAGAAGCTATAGCTCCTATGAGTGTTAATAAGATTGAAGCCCTTTTAATAGAAGGGTTGAGAATTCAATCTGGCATCTCAAATGAGGAGGCACCATCAAACATTCATGGAGAGATCAACAATGATCTTGATGGTTTGATGGGTCTGTCTGTAACATTGGATCAATGGTCGAGACTTGATTCTGGCATCATTCAAGGAAAACATAGTTTGGGACAAATTTTGAAGACCCTTAAAGCACACAATTATAAAGTCACTGAATTAGATAATGAAGGGTTGAAAAGTGCCGCAGATAATGCGGAAATAGATGACAACAATCGCACATATTTGGGAAATCACGTAACAGTTGCTTTTATGATCCAGCACAGAGATCCTCTAAGAAATTATGAAGCAGTTGGAGTTCCAATGCTGGTTTTAACTCAGGTAGAAAGAGTTGACAGCGATTTTGTTGAGAATGCAGATATAGATAAAGAAACCCTTCAATCTAGATTCAAAATCAAGGAGATTCATCTTGCAGGTGTCCTTAACAAAGGTGGAAACCGGCAAGTTTGGGGCACTGCGTCTCAGCAACAATCTGGGTTGCGTTGGTTGCTTGCGAGTGGCATGTGTAGTAGTACTGTCAAACATTCGTCTTCAAAATCAAAGTCGATTATTGTTAGACCATCTTCGCTGTTTACCAACAAGTCGATGAATCAGGATATCTTGTGGAGCATTTCTTGTGTTAAAGATAACATGGATATTAATGCACATATTAGGAATGTTGATATCATCTTCCCAAAGTGA 3069 0.3913 MMMKPKFDSENKDNAYDVGEIETETDWKNGQQELLHDIQELSNALYLQNTPFKPSTLSSLHNRSKSAEKTRLSKSQLNSTPRFVSEDLLIRDKKLLSLGWNWKKPLKALTHIGSRKFDCRFKLHVHSIEGLPLSFDGVRLSVHWKRKNSILQTCPSRVLQGSAEFDETLIHRCTVYGSRTASGHAVKYDSKCFLIYASIVGEPGYDIGKYQVDLTRLLPLSLDELWGDKSSGKWSTSFSLVGKALGARINVSFSYQVMKDELMRFGGCNGNVVRLINLKTGPSSLDNVVGYSPNNRDIKVRQSQNDMVLSNEAVMNSGSGFSKSITFLYQKLDEGNLDNSTWADSESSQGSNLYVSDDTEFSISEQGVEISEEDSFEFDQTGIQVVDMSTVEIINVDEIIKDADTFVDKNARCDSLDTVYSRNVNVDMADNIKHRFSFSSINLPCTKVEDSVPETSELLDQEEHYLRVESNYKAHKKSHSLDDIIDSVTSDFLKTLALESDSFRSSSDADPLSPREHLLRQFESEALASDNFAFDFDAIEEELGEDTLGHNCGNYAVDSDLSLLIGAAEEEYERENQSLIQRRKAKIIEDLETDTLMQQWGLDERDFQNSPRTWAGGFGSPIELSDEEPSILPSIGEGLGSFVQTTNGGFLRSMCPSLFKNAKNRGNLIIQASNPVVLPAKMGNDILDILLHMASARAQELHDHISKLMPLQDITGKSIKHIVSDADTNTEAPGRKGSWQHDFFEEFQSSYLTDKDQCLDSVSLEAIAPMSVNKIEALLIEGLRIQSGISNEEAPSNIHGEINNDLDGLMGLSVTLDQWSRLDSGIIQGKHSLGQILKTLKAHNYKVTELDNEGLKSAADNAEIDDNNRTYLGNHVTVAFMIQHRDPLRNYEAVGVPMLVLTQVERVDSDFVENADIDKETLQSRFKIKEIHLAGVLNKGGNRQVWGTASQQQSGLRWLLASGMCSSTVKHSSSKSKSIIVRPSSLFTNKSMNQDILWSISCVKDNMDINAHIRNVDIIFPK* 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3508 1022 ProSiteProfiles C2 NT-type domain profile. 109 257 IPR019448 -
Tpr1g3508 1022 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 114 258 IPR019448 -
Tpr1g3508 1022 MobiDBLite consensus disorder prediction 56 76 - -
Tpr1g3508 1022 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 4 799 IPR039614 -
Tpr1g3508 1022 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 801 1022 IPR039614 -
Tpr1g3508 1022 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 2 801 1022 IPR039823 -
Tpr1g3508 1022 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 2 4 799 IPR039823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3508 Tpr-Chr1 39273893 39277793 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3508 - - mtr:MTR_1g015120 1473.76