Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3499 ATGAGTTTATCAAAGAAAGGAGGATCACCACATGACACGAAACTGAACTCTCCAAACAAGGCGATCAGTTTGAATCCAAATGCAGCAGAGTTTATTCCCTTTTCCCTCAGATCTTTGCCATCTGGAAGTACTAGCTCGGTAGACGCAACGGCAAGACTTACAACTGCTGGTTCTCTAGGAAAATCAGTTTTAGATCGATCAGAATCATCCATTTCAAATAATTCTGATGATGAAGCCCACAATTACTGGCGTTGTCAACTCCCGGATGATATCACTCCTGATTTCAATGTCATTGAAGAAGATGAACCCCAAGGTCTTAACAACCTCTCCTTCGCAGGCTTATCTATAAACGACGATAATGAATCGTCAATGTTTTCTTCTACCACGGGAAGTAGATATATACCAAACGAGCAGCAGGAATTGTCTCATCAGCACCTTAATGGAAATACCTTTGTCGATAAGTTAAGGTTTTCCAATTCAACCTACCGGGAGGAACCATCTTCGGCAAGCTTTTTAAATTCATTGGCAAAGCCTTGGGATAGACCCATTGGGAATAACAACCTGCATATTAGCGGTGGTCAAGACGCAGTTGCTTACGATGGCAATGCTAGACATGGATTCTTAAATGATGTTTCGACTGAGAATGCTATTGTGGATGAGACTGATTTTAACCCTTTGGAATTTTTAGCTTCTCTATTCCCTGGTTTTGCATCAGAAAGCCTTGCTGAAGTTTACTTTGCCAATGGATGCGATTTACATCTGACCATTGAGATGCTCACTCAGTTAGAGATTCAAGTCGATAGTAATTTCGGCCAGAACCCAAGTCCGAAGACTCTATCATCTCCCAATCTGACTGCAATGGACTTTCCAGCACTTGCTCCAACAAATGGCCAGACTACTACTGCAAAATATGCTGCAGATAATGTTCAACAAAGTGCCAATCCTTACTTACCGTCTGGCAAAGACCTGCTCATGTTCAAAACTAGCTCGTCTTTTCCAACTAGAGGTGCTACTGATTTTGCTTCAGCTGTCAGAAAATTGGCTTCTCAGGATTCTGGAATATGGAAGTATGATAGAAATGGTTCTGGTGATGCTTCCACTGGATCAAGCAGGAGTTTAAATGTTCTAGCTAGTGCTTATAATGGTGGACAGGGGAGAACTAACTTTGGTGATAGGTTACAAAACCGTGGTTCTGCTCGGCCAGCTCCTGTTTGGCTTGAAACTGGTGACGCTGTTGCAAATATGTATACTGAACTACGGGAGGAGGCTCGAGATCATGCACGCTTACGTAATGCATATTTTGAGCAGGCACGGCAAGCCTACCTTATTGGCAATAAGGCCCTTGCAAAGGAGCTAAGTGCTAAAGGGCAAATTCATAACATGCATATGAAAGAAGCTCACGGGAAAGCTCAAGAATCTATTTACCGTCAGAGGAATCCTGTTGGTCCAGAGATGCATGTTAATGGAAGAGGACACGAGAGAATGATAGACTTACATGGACTCCATGTAAGTGAAGCGATTCACGTGCTGAAACACGAACTGAGTGTGCTAAGAAGCACAGCCAGAGCTGCCGAGCAGCGTTTGCAGGTTTATATCTGTGTTGGTACCGGTCATCATACAAGAGGTTCCCGCACTCCTGCGAGACTTCCAATAGCTGTACAGCGTTATCTACTCGAAGAAGAGGGTCTTGATTTCACAGAACCACAGCCAGGCCTGATTCGTGTTGTGTTATATTGA 1737 0.4352 MSLSKKGGSPHDTKLNSPNKAISLNPNAAEFIPFSLRSLPSGSTSSVDATARLTTAGSLGKSVLDRSESSISNNSDDEAHNYWRCQLPDDITPDFNVIEEDEPQGLNNLSFAGLSINDDNESSMFSSTTGSRYIPNEQQELSHQHLNGNTFVDKLRFSNSTYREEPSSASFLNSLAKPWDRPIGNNNLHISGGQDAVAYDGNARHGFLNDVSTENAIVDETDFNPLEFLASLFPGFASESLAEVYFANGCDLHLTIEMLTQLEIQVDSNFGQNPSPKTLSSPNLTAMDFPALAPTNGQTTTAKYAADNVQQSANPYLPSGKDLLMFKTSSSFPTRGATDFASAVRKLASQDSGIWKYDRNGSGDASTGSSRSLNVLASAYNGGQGRTNFGDRLQNRGSARPAPVWLETGDAVANMYTELREEARDHARLRNAYFEQARQAYLIGNKALAKELSAKGQIHNMHMKEAHGKAQESIYRQRNPVGPEMHVNGRGHERMIDLHGLHVSEAIHVLKHELSVLRSTARAAEQRLQVYICVGTGHHTRGSRTPARLPIAVQRYLLEEEGLDFTEPQPGLIRVVLY* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3499 578 SMART SMR_2 493 578 IPR002625 -
Tpr1g3499 578 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 7 1 578 - -
Tpr1g3499 578 ProSiteProfiles Smr domain profile. 496 578 IPR002625 -
Tpr1g3499 578 CDD CUE_CID7_like 224 265 IPR041806 -
Tpr1g3499 578 MobiDBLite consensus disorder prediction 1 21 - -
Tpr1g3499 578 SUPERFAMILY SMR domain-like 494 577 IPR036063 -
Tpr1g3499 578 SMART DUF1771_2 415 480 IPR013899 -
Tpr1g3499 578 Pfam Smr domain 496 564 IPR002625 -
Tpr1g3499 578 Pfam Domain of unknown function (DUF1771) 416 479 IPR013899 -
Tpr1g3499 578 Coils Coil 507 527 - -
Tpr1g3499 578 Gene3D - 463 578 IPR036063 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3499 - - gmx:100796128 949.118
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3499 1 39200670 39206302 Tpr1g3499 1 39200670 39206302 ECH