Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3442 ATGTTTCAAAGAAACCCTTTATACACAAACCCAGAACCATGTCAGCATCTTTCTGATTACAAACACAAACATGGATTCAGTGGCTACAAAGCTATTCAAAAGCTACTTGTAACTTCTCCAATTGGAAAAATTAGTTTAAAAAAACCTAATTTAAGAATACCCAGATGCAGTTTTTGTAATGGGTGTGAAAAAAAAAGGATTTTTTTATGTTTGATTTGTTCTTCATTCTCTTGTTTTGATCATACCCTTTTGCATCCAAAAGCTGAAATTGGTCATACTTTGTTTATTGATATAGAAAGAGCTGAACTTTTTTGTGGGTTGTGTTGTGATCAAATTTATGACCCTGATTTTGATCAAGTTGTTATGGCTAAACATTCAATGGTTTTGCCACAAGGTGCTATTGGTAATGAGAGTATTGGTCAGAGATTGATTAAGAGAAGGAGATTGGTTTCTGGGGTTGGATTGTATTTGAATAGTAAATCTAAGTTTAGTTTTCCAATTAAAGATCTGAGGGGTAAATCTTGTTTTCCTGAGGGATTAAGGGGTTTGAATAACTTGGGTAGTACTTGTTTTATGAATTCTGTGTTGCAAGCATTGTTACATGCACCTCCTTTCAGGGACTATTTCTTGAGTGGTGGACATAGTTTGGAAGATTGTAAGAGAAGAACGATCGATCGGCTGTGTTTGATTTGTGATATCAATGCTGTTTTTTCGGCTATGTATTCGGGTGACCGAAATCCGTATAGCCCTGCTCGGTTTCTCTACAGCTGGTGGCAGCATTCGGCAAATTTAGCGAGTTACGAGCAGCAGGATGCTCATGAGTTTTTCATTTCGATGTTAAATACAATCCATGAGAAAGAGGGCATAACAAGGAATGGAAGCAAAGGAAATGGTGGAGATTGTCAATGCATTGCTCACAGAGTGTTTTATGGACTTTTGAGATCAGATGTTACCTGTATGGCCTGTGGATTCATCTCAACAACCTATGACCCTTTTTTGGACATTTCACTTAACTTAGACATTAATATCGCTTTGACAGAAAAAGGTAAAAAAGTTACCAAATCAAATGAGGATGACAGCAAGTCTACACTTCTCGGTTGTTTGGATTTGTTCACTCGGCCAGAGAAGTTAGGTTCGGACCAGAAACTTTACTGCCAGAAATGTAAGGAAAGGCAAAACTCATTGAAACAAATGTCAATTACAAAGCTCCCTCCGGTACTTACTTTGCACGTAAAACGATTTGAGCATTCTTTTGTTAAGAAGTTGTCAAGAAAGATCGACCGATACCTACAATTTCCATTCTCCTTAGACATGACTCCATATTTGTCCTCTTCTATCCTTAGAGCCAGATATGGAAATAGAATTTTTAATTTCGGAGGCAATGAATCTGATACATTTTCCAAGTTCGAGATTTTTGCAGTGGTGACACATTCAGGGACGCTCGAGTCTGGCCATTATGTTTCTTTTGTACGACTAAGGAAGCAATGGTACAGATGCGACGATGCTTGGATCACCGAGGTTGATGAGGCAACAGTTAGAGCTTCACAATGTTACATGATCTTTTATGCGCAGAAAACATTGTTCAATAACGCAAGTGAAGATCTGAGTCACCTTCCGACTTCACCTGGAAGAGAGGTTTTCATTCCTATTGCTGGTTGTTGCTAG 1665 0.3814 MFQRNPLYTNPEPCQHLSDYKHKHGFSGYKAIQKLLVTSPIGKISLKKPNLRIPRCSFCNGCEKKRIFLCLICSSFSCFDHTLLHPKAEIGHTLFIDIERAELFCGLCCDQIYDPDFDQVVMAKHSMVLPQGAIGNESIGQRLIKRRRLVSGVGLYLNSKSKFSFPIKDLRGKSCFPEGLRGLNNLGSTCFMNSVLQALLHAPPFRDYFLSGGHSLEDCKRRTIDRLCLICDINAVFSAMYSGDRNPYSPARFLYSWWQHSANLASYEQQDAHEFFISMLNTIHEKEGITRNGSKGNGGDCQCIAHRVFYGLLRSDVTCMACGFISTTYDPFLDISLNLDINIALTEKGKKVTKSNEDDSKSTLLGCLDLFTRPEKLGSDQKLYCQKCKERQNSLKQMSITKLPPVLTLHVKRFEHSFVKKLSRKIDRYLQFPFSLDMTPYLSSSILRARYGNRIFNFGGNESDTFSKFEIFAVVTHSGTLESGHYVSFVRLRKQWYRCDDAWITEVDEATVRASQCYMIFYAQKTLFNNASEDLSHLPTSPGREVFIPIAGCC* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3442 554 PANTHER UBIQUITIN C-TERMINAL HYDROLASE 22 5 550 - -
Tpr1g3442 554 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 5 550 - -
Tpr1g3442 554 SUPERFAMILY Cysteine proteinases 178 523 IPR038765 -
Tpr1g3442 554 Gene3D Cysteine proteinases 175 529 - -
Tpr1g3442 554 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 182 197 IPR018200 GO:0004843|GO:0006511
Tpr1g3442 554 Pfam Ubiquitin carboxyl-terminal hydrolase 182 522 IPR001394 GO:0004843|GO:0016579
Tpr1g3442 554 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 129 IPR013083 -
Tpr1g3442 554 SUPERFAMILY RING/U-box 13 119 - -
Tpr1g3442 554 Pfam Zn-finger in ubiquitin-hydrolases and other protein 56 116 IPR001607 GO:0008270
Tpr1g3442 554 ProSiteProfiles Zinc finger UBP-type profile. 36 131 IPR001607 GO:0008270
Tpr1g3442 554 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 181 525 IPR028889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3442 Tpr-Chr1 38734207 38738267 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3442 182 524 Miscellaneous Gene Families AT2G24640 30.484 6.56e-37 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3442 K11366 - gmx:100806347 922.924