Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3431 ATGGCCGTCCAAAAAATCATAATCACACCAATTTTGGTTTTTCTAATGACCATTTTCTTCAATGCATCATCTTCATCCTCTTCAAAGAATTCACAATATCCATTTTTAAACCATGGTGTTAGATCAGCTTATTGGCCTGCAGGTGGTGATTTTTTACCTTCTTCAATTAATACAAACTACTTCACTCACATTTTCTATGCCTTCATTCAACCCGACCCAATTTCGTTCAACCTTATAATCACAAAATCTGACCAAAAATGGGCCCACAATTTCACCAATGAGCTCAGACACCGTTATCCGCCGGTGAAAACTCTTTTTTCCATCGGAGGTGGTACCAGCAATTCAACACTCTTCTCTGAAATCGCTAGCACAAAACAAAACAGAGAAATCTTCATAAATTCGACAATTCACGTGGCACGAAAATATGGGTTTGATGGTGTTGACTTGGATTGGGAATTTCCTCAAACTGAAAAGGATATGTTTAACCTCGGATTGCTATATGAGGAATGGTATAATGCTTTGTTTGCCGAAGCTATAGTTGGGAGAAAACCACGTTTGCTTTTGACTTCTGCGGTTTATTATAATTCCACAATAAGGTTGACTGGTAAAGGGTCGCGATCTTATCCGGCCCATGCTATCAATAAATACTTGGATTGGGCCAGTCCAATGTGTTTCGATTATCACGGCTCGTGGGCTAATAATACAGGCTTTAATGCTGCTTTATATGACCCAGAGTCCGAAATTAGTACAAATTTTGGAATTAGGTCATGGATCAAATCAGGTGTACGACCCGAAAAGTTGGTTATGGGCTTGGCTTTATACGGGAGGACGTGGGAGCTGAAGGATCCGAGTGTTCACCGGGTCGGAGCCGATGCGGTGGGACCCGCAACCGACACAGATGGTAGTATGAATTATAATGAAATCTTGAAGTTTAATAAAGATAGTGGTGCTAATGTTGTGTATGATAAGGTTGCTGTGTCTTTTTATTCTTATGCGGGTACTACTTGGATTGGGTATGATGATGTTCCATCTATAACTACTAAGGTTAGGTTTGCTAAGTCATTGGGCTTAAAGGGCTATTTCTTTTGGGCTCTTGGGAAGGACAAGGATTGGACCATCTCAAGACAAGCTTCAAATACATGGGGACACTGA 1152 0.4071 MAVQKIIITPILVFLMTIFFNASSSSSSKNSQYPFLNHGVRSAYWPAGGDFLPSSINTNYFTHIFYAFIQPDPISFNLIITKSDQKWAHNFTNELRHRYPPVKTLFSIGGGTSNSTLFSEIASTKQNREIFINSTIHVARKYGFDGVDLDWEFPQTEKDMFNLGLLYEEWYNALFAEAIVGRKPRLLLTSAVYYNSTIRLTGKGSRSYPAHAINKYLDWASPMCFDYHGSWANNTGFNAALYDPESEISTNFGIRSWIKSGVRPEKLVMGLALYGRTWELKDPSVHRVGADAVGPATDTDGSMNYNEILKFNKDSGANVVYDKVAVSFYSYAGTTWIGYDDVPSITTKVRFAKSLGLKGYFFWALGKDKDWTISRQASNTWGH* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3431 383 PANTHER CLASS V CHITINASE CHIT5A 20 382 - -
Tpr1g3431 383 SUPERFAMILY (Trans)glycosidases 43 370 IPR017853 -
Tpr1g3431 383 PANTHER CHITINASE 20 382 - -
Tpr1g3431 383 SUPERFAMILY Chitinase insertion domain 274 339 IPR029070 -
Tpr1g3431 383 CDD GH18_plant_chitinase_class_V 40 374 - -
Tpr1g3431 383 Gene3D Glycosidases 54 369 - -
Tpr1g3431 383 Gene3D - 273 339 IPR029070 -
Tpr1g3431 383 Pfam Glycosyl hydrolases family 18 44 368 IPR001223 GO:0005975
Tpr1g3431 383 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 144 152 IPR001579 GO:0004553|GO:0005975
Tpr1g3431 383 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 39 383 IPR001223 GO:0005975
Tpr1g3431 383 SMART 2g34 39 368 IPR011583 GO:0008061
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3431 Tpr-Chr1 38625533 38627630 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3431 40 381 Glycoside Hydrolase AT4G19810 42.442 6.61e-91 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3431 K01183 - gmx:100787511 535.028