Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3426 ATGGGTTCTTCTTCAGTCTTCTCTGTAGCTTCTGCTTCACTTTCGTTGCACGATACCAACATCAAGAAAAACCTCAATTTTGGAACCAACGCTTTCAGATTTAACAACGATGGAACCAACACTTTCTCCAATTTTAAGTCTTCTAGACGGATCTCTATGGCTGTTGCGGTTAATGTTTCTCGGTTTGAGGGTATACCAATGGCTCCTCCTGATCCAATTCTTGGTGTTTCTGAAGCATTTAAAGCAGACACGAACGCTGTCAAGCTCAATCTTGGAGTTGGGGCTTACAGAACGGAAGAACTACAGCCATATGTGCTTAATGTCGTTAAGAAGGCGGAGAATCTTATGCTGGAGAGAGGGGAAAACAAAGAGTATCTCCCTATTGAGGGTTTGGCCGCATTTAATAAGGCAACTGCTGAGTTGTTACTCGGAGCAGACAATCCAGCAATCAAACAACAAAGAGTTGCCACTGTCCAAGGTCTTTCTGGAACTGGTTCTTTGCGACTAGGTGCAGCTCTGATACAACGGTATTTTCCCGGGGCAAAAGTTTTGATATCAAATCCTACATGGGGTAATCACAAGAATATTTTCAATGATGCTGGAGTACCATGGTCCGAGTACCGATACTATGACCCCAAAACAGTTGGGTTGGATTTTGAAGGCATGATCGAAGATATAAAGTCAGCTCCTGAAGGAACTTTTGTGCTACTTCATGGATGTGCTCATAACCCGACTGGTATTGATCCAACACCACAACAGTGGGAAAAGATAGCTGATTTAATTCAACAAAAGAACCACATTCCATTTTTTGATGTTGCTTACCAGGGTTTTGCTAGTGGAAGCCTTGATGAAGATGCGGCATCTGTGAGATTATTTGTGGCACGTGGCATGGAGGTTCTTGTAGCTCAGTCATACAGTAAAAATCTTGGTCTTTATGCTGAAAGGGTTGGAGCTATCAATGTCATTTCCTCTTCACCAGAATCTGCAACAAGGGTAAAGAGCCAATTGAAAAGGCTTGCTCGACCAATGTACTCTAATCCACCTGTTCACGGGGCTAGGATTGTTGCTAATATTGTTGGGGATCCAGTGCTCTTCGGTGAATGGAAAGCAGAAATGGAAATGATGGCTGGAAGGATAAAAACCGTTAGACAGGAGTTATATGATAGTATTTCTTCAAAAGACAAGAGTGGAAAGGATTGGTCGTTCATACTTAAGCAGATAGGCATGTTCTCATTCACCGGCTTGAACAAGAACCAGAGTGACAATATGACGAATAAGTGGCATATATACATGACAAAGGATGGAAGGATTTCCCTGGCAGGATTGTCGCTGGCCAAATGTGAATACCTTGCAGATGCTATTATTGATTCGTATCACAATGTCAGCTGA 1389 0.4262 MGSSSVFSVASASLSLHDTNIKKNLNFGTNAFRFNNDGTNTFSNFKSSRRISMAVAVNVSRFEGIPMAPPDPILGVSEAFKADTNAVKLNLGVGAYRTEELQPYVLNVVKKAENLMLERGENKEYLPIEGLAAFNKATAELLLGADNPAIKQQRVATVQGLSGTGSLRLGAALIQRYFPGAKVLISNPTWGNHKNIFNDAGVPWSEYRYYDPKTVGLDFEGMIEDIKSAPEGTFVLLHGCAHNPTGIDPTPQQWEKIADLIQQKNHIPFFDVAYQGFASGSLDEDAASVRLFVARGMEVLVAQSYSKNLGLYAERVGAINVISSSPESATRVKSQLKRLARPMYSNPPVHGARIVANIVGDPVLFGEWKAEMEMMAGRIKTVRQELYDSISSKDKSGKDWSFILKQIGMFSFTGLNKNQSDNMTNKWHIYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3426 462 Gene3D - 120 361 IPR015421 GO:0003824
Tpr1g3426 462 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 304 317 IPR004838 GO:0003824|GO:0009058|GO:0030170
Tpr1g3426 462 CDD AAT_like 89 454 - -
Tpr1g3426 462 Gene3D Aspartate Aminotransferase, domain 1 65 454 IPR015422 GO:0003824
Tpr1g3426 462 PANTHER ASPARTATE AMINOTRANSFERASE, CYTOPLASMIC 4 460 - -
Tpr1g3426 462 PANTHER ASPARTATE AMINOTRANSFERASE 4 460 IPR000796 GO:0006520|GO:0008483
Tpr1g3426 462 Pfam Aminotransferase class I and II 88 454 IPR004839 GO:0009058|GO:0030170
Tpr1g3426 462 PRINTS Aspartate aminotransferase signature 235 254 IPR000796 GO:0006520|GO:0008483
Tpr1g3426 462 PRINTS Aspartate aminotransferase signature 266 278 IPR000796 GO:0006520|GO:0008483
Tpr1g3426 462 PRINTS Aspartate aminotransferase signature 334 359 IPR000796 GO:0006520|GO:0008483
Tpr1g3426 462 PRINTS Aspartate aminotransferase signature 403 421 IPR000796 GO:0006520|GO:0008483
Tpr1g3426 462 SUPERFAMILY PLP-dependent transferases 60 456 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3426 Tpr-Chr1 38574248 38578089 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3426 K00811 - gmx:547792 802.357