Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3415 ATGGCAACATATCTTGCCTTCTATCCTGAAGATAATAATAAAATAGTTGTTGGCTTGGATGACTGCAGCATAATTATATTCAATATTCATGAAAATGATCAGCCTAAAATCAAGCTTGAGGGTCATTCTAAAAGAGTTACTTCTTTTGCCTTCTCAAATACTTTGAATCTTCTTGTTTCTGCTGATGCAAGTGCTCAGATTATTGTATGGAATAGCAGAAGCTGGGAAAAATTGAGAGATAGAAACTTGCAAATGAAAAATGCGACGCAAATATTATCTGAAACTCAAATTCAATTTCACCCTGACCAACAAAAATTTCTTGTTGCACATAACATTCTTCTTGGAATTTATGAAGCAACAGAACTACAATGTGTCAGCCAGTGGGATCCAAAATTTGCAACAGTAATCAACCAAGCAACATTTTCATCTAATGGTCAAATGGTGTATGCTAGTTTTGGTGATGGAACTTTGGCAATATTTGATGCATCAAATTTTCAAATGCATTATATGATTCATCCCTCTATTTACCTTTCATCAATTTCCAGTTTGAAAATCTATCCAACTGCTATAGCTGCACATCCTCAGAAACCAAACCAATTTGCTGCAGGATTCACAGATGGTAGTGTTTATGTGTTTGAGCCAAAGGAACCACCAAGTGGTAATTGGATTATGCCTCAAGTTTGA 684 0.3523 MATYLAFYPEDNNKIVVGLDDCSIIIFNIHENDQPKIKLEGHSKRVTSFAFSNTLNLLVSADASAQIIVWNSRSWEKLRDRNLQMKNATQILSETQIQFHPDQQKFLVAHNILLGIYEATELQCVSQWDPKFATVINQATFSSNGQMVYASFGDGTLAIFDASNFQMHYMIHPSIYLSSISSLKIYPTAIAAHPQKPNQFAAGFTDGSVYVFEPKEPPSGNWIMPQV* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3415 227 ProSiteProfiles Trp-Asp (WD) repeats profile. 39 80 IPR001680 GO:0005515
Tpr1g3415 227 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 227 IPR027728 GO:0006355
Tpr1g3415 227 PANTHER TOPLESS-LIKE PROTEIN 1 227 - -
Tpr1g3415 227 SUPERFAMILY WD40 repeat-like 3 215 IPR036322 GO:0005515
Tpr1g3415 227 SMART WD40_4 179 213 IPR001680 GO:0005515
Tpr1g3415 227 SMART WD40_4 32 71 IPR001680 GO:0005515
Tpr1g3415 227 SMART WD40_4 121 161 IPR001680 GO:0005515
Tpr1g3415 227 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 39 74 - -
Tpr1g3415 227 Gene3D - 2 224 IPR015943 GO:0005515
Tpr1g3415 227 Pfam WD domain, G-beta repeat 35 71 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3415 Tpr-Chr1 38452570 38454941 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3415 - - mtr:MTR_1g012820 319.316