Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3413 ATGGATACATTGCCGACGACATCCACGGCGGCGAAGCGAGGAGGAGGAAGATCCAAAGTCGTTCAAACGTCAAAATCTTCTCTCCTCTTAGCTTTCTTCTCTTGTGTTGCTTGGCTTTACGTCGCTGGCAGGTTATGGCAAGATGCTGAGAATCGAAATTTACTTGCTACTCTTCTCAAGAAGAATTCAGCACAGAGACCTAAGGTTCTTACGGTGGAAGATAAGTTAATGGTACTAGGATGCAGGGATCTGGAGAAGAGAATTGTGGAAGCTGAGATGGAATTGACATTGGCCAAGAGTCAAGGGTACCTCAAAGGCCAACGGCTGCAAACTGCCTCTGCTGACCGTAGGCTTCTTGCTGTTATTGGAGTGTATACTGGTTTTGGAAGCCGATTGAAAAGGAATGTATTCAGAGGGTCTTGGATGCCTAGAGGTGATGCCTTGAAAAAACTTGAAGAAAGAGGAGTGGTCATACGTTTTGTAATTGGTCGGAGTGCTAATCGAGGTGATAGCTTGGATCGCAATATTGATGAGGAAAACCGCTCAACAAAGGATTTCTTGATTCTTGAAAGTCATGAAGAAGCTCAAGAAGAGTTGCCTAAAAAAGCAAAAATCTTCTTTAGTACAGCAGTTCAGAACTGGGATGCTGATTTTTATGTGAAAGTCGATGACAGTATTGACATTGATCTGGAGGGTTTAATTGCACTTCTTGACCGTCGCCGTAGCCAGGATGGCGCATATATTGGATGCATGAAGTCAGGAGACGTGATATCAGAAGAGGGAAAGCTTTGGTATGAACCTGACTGGTGGAAATTTGGGGATGAAAAATCGTATTTCCGACATGCAGCTGGTTCACTTGTTATACTCTCAAAGAATTTAGCACAGTACATTAACATAAACAGTGTATCTTTGAAGACCTATGCCTATGATGATACATCATTGGGATCATGGATGATGGGCATCCAATCAACATATATTGACGACAGTCGCCTTTGCTGCAGTGGCATCAGCCAAGATAAGTTATGCTCGGTGGCTTGA 1038 0.4355 MDTLPTTSTAAKRGGGRSKVVQTSKSSLLLAFFSCVAWLYVAGRLWQDAENRNLLATLLKKNSAQRPKVLTVEDKLMVLGCRDLEKRIVEAEMELTLAKSQGYLKGQRLQTASADRRLLAVIGVYTGFGSRLKRNVFRGSWMPRGDALKKLEERGVVIRFVIGRSANRGDSLDRNIDEENRSTKDFLILESHEEAQEELPKKAKIFFSTAVQNWDADFYVKVDDSIDIDLEGLIALLDRRRSQDGAYIGCMKSGDVISEEGKLWYEPDWWKFGDEKSYFRHAAGSLVILSKNLAQYININSVSLKTYAYDDTSLGSWMMGIQSTYIDDSRLCCSGISQDKLCSVA* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3413 345 Coils Coil 81 101 - -
Tpr1g3413 345 Pfam Galactosyltransferase 133 322 IPR002659 GO:0006486|GO:0016020|GO:0016758
Tpr1g3413 345 Gene3D - 147 330 - -
Tpr1g3413 345 PANTHER HYDROXYPROLINE O-GALACTOSYLTRANSFERASE HPGT3 3 340 - -
Tpr1g3413 345 Pfam Domain of unknown function (DUF4094) 24 101 IPR025298 -
Tpr1g3413 345 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 3 340 IPR002659 GO:0006486|GO:0016020|GO:0016758
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3413 Tpr-Chr1 38432551 38439274 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3413 77 345 Glycosyltransferase AT2G25300 77.695 7.64e-161 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3413 K20854 - gmx:100816327 630.557