Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3388 ATGATAAAATCCATACTAAACAACCTCCAACTTCCACCAAACACCCCAAAAACAAGACTTGCAGAACAAACAATCTTAACCCTTCTTCAATCCCACTGCAACACATTCACAAAACTCACTCAAATCCACACTCTAATCCTCAAAAATGGCCTCCAAAACAACCCATTAGTCCTCACAAAATTCACTTCAACTTCTTCCAACATCAATGCCATTCATTACGCTTCCTCATTCTTATTCCCCTCTCACCAAACACAAACCACCCCATTACCATCCTATGATGCATTCCTCTTCAACACACTTATCAGAGCTTTTTCTCAAACCAATGATTCCAAATCAAAGGCATTGGTGTTTTACAAAACAATGCTTTGTTATGGTGTTTTGCCTAATAAGTTTACTTTTCCGTTTGTTCTTAAAGCGTGTGCCGGTATTGGGAATTTGAGGTTAGGGAAATTGGTTCATGGGTGTGTTGTGAAGTTTTGTTTTGAGGAGGATGTTCATGTTATGAATACTTTGATTCATATGTATTGTTGTTGTGAGGGTGATATTGGGTTTGAGTTTGCTCATAAGGTGTTTGATGATAGTCCTAAGTTGGATACTGTGACTTGGAGTGCTATGATTGGTGGGTATGTGCGGTTGGGTCGTTCTGCACGTGCTGTTGGATTGTTTAGGGAAATGCAGGTTATGGGTGTTTGCCCTGATGAGATCACAATGGTTTCAGTTTTGTCTGCATGTGCTGATTTGGGGGCGCTTGAGCTTGGAAAATGGGTGGAATCATACATTGAGAGGAAAAACATTTCAAAGTCTGTGGAACTCTGCAACGCACTGATAGACATGTTTGCAAAGTGCGGCAATGTTGACAAAGCCATCAAACTGTTCAGACAAATGGAGTCACGCACCATAGTTTCATGGACTTCAGTAATTGTTGGTCTTGCAATGCATGGTCGTGGTGTAGATGCTGTTTCTATATTTGATGAAATGGTTGAAAATGGGATAACGCCTGATGATGTTGCTTTCGTTGGGGTACTCTCTGCTTGCAGTCACTCAGGACTTGTTGATAAAGGAAGGTGCTATTTCAATTCAATGGAGAAGAATTTTAGCATTGTGCCAAAGATAGAACACTATGGATGCATGGTGGATTTGCTTTGTAGAGGTGGATTTGTTAAAGAGGCTTTTGAGTTTGTTCAAAAGATGCCTTTTGAACCAAACCAAATCATATGGAGAACAATAATCACTGCTTGTAATGCAACTGGGAAACTCAAGCTTGGAGAGAGTATCTCCAAAGAGCTAATCAAAAGTGAGCCGATGCATGAGTCTAATTATGTTTTGCTGTCAAACATTTACGCAAAATTGCGACGGTGGGAGAAGAAGACTAAGGTAAGGGAGATGATGGATATGAGAGGGATGAAGAAGGTTCCAGGGAGTACCATGATTGAGGTAAACAATGAAATGTATGAGTTTGTTGCTGGTGATAAGTCTCATGATCAATATAAAGAGATATATGAAATGGTGGATGAGATGGGTAGAGAAATCAAAAGGGCAGGGTATGTGCCTACAACATCTCAAGTGTTGCTTGACATTGATGAAGAAGATAAAGAAGATGCTTTATATAGGCACAGTGAAAAGCTTGCCATAGCTTTTGCTCTTTTGAATACTCCGCCTGGAACTTCCATTAGGATTGTGAAGAACTTGCGCGTTTGTGAAGATTGTCACTCTGCTACTAAGTTTATCTCTAAGGTTTATAATCGAGAGATTATCGTCAGGGACCGCAATCGCTTCCACCATTTCAAGAATGGTTTGTGCTCTTGTAAAGACTTTTGGTAA 1821 0.4014 MIKSILNNLQLPPNTPKTRLAEQTILTLLQSHCNTFTKLTQIHTLILKNGLQNNPLVLTKFTSTSSNINAIHYASSFLFPSHQTQTTPLPSYDAFLFNTLIRAFSQTNDSKSKALVFYKTMLCYGVLPNKFTFPFVLKACAGIGNLRLGKLVHGCVVKFCFEEDVHVMNTLIHMYCCCEGDIGFEFAHKVFDDSPKLDTVTWSAMIGGYVRLGRSARAVGLFREMQVMGVCPDEITMVSVLSACADLGALELGKWVESYIERKNISKSVELCNALIDMFAKCGNVDKAIKLFRQMESRTIVSWTSVIVGLAMHGRGVDAVSIFDEMVENGITPDDVAFVGVLSACSHSGLVDKGRCYFNSMEKNFSIVPKIEHYGCMVDLLCRGGFVKEAFEFVQKMPFEPNQIIWRTIITACNATGKLKLGESISKELIKSEPMHESNYVLLSNIYAKLRRWEKKTKVREMMDMRGMKKVPGSTMIEVNNEMYEFVAGDKSHDQYKEIYEMVDEMGREIKRAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLNTPPGTSIRIVKNLRVCEDCHSATKFISKVYNREIIVRDRNRFHHFKNGLCSCKDFW* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3388 606 Pfam E motif 420 478 IPR046848 -
Tpr1g3388 606 Pfam DYW family of nucleic acid deaminases 514 606 IPR032867 GO:0008270
Tpr1g3388 606 Gene3D Tetratricopeptide repeat domain 251 361 IPR011990 GO:0005515
Tpr1g3388 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 298 IPR002885 -
Tpr1g3388 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Tpr1g3388 606 Pfam PPR repeat family 198 245 IPR002885 -
Tpr1g3388 606 Pfam PPR repeat family 299 346 IPR002885 -
Tpr1g3388 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 93 128 IPR002885 -
Tpr1g3388 606 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 25 592 - -
Tpr1g3388 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 299 333 IPR002885 -
Tpr1g3388 606 Pfam E+ motif 484 510 IPR046849 -
Tpr1g3388 606 Pfam PPR repeat 272 298 IPR002885 -
Tpr1g3388 606 Pfam PPR repeat 373 397 IPR002885 -
Tpr1g3388 606 PANTHER - 25 592 - -
Tpr1g3388 606 Gene3D Tetratricopeptide repeat domain 362 544 IPR011990 GO:0005515
Tpr1g3388 606 Gene3D Tetratricopeptide repeat domain 88 150 IPR011990 GO:0005515
Tpr1g3388 606 Gene3D Tetratricopeptide repeat domain 151 250 IPR011990 GO:0005515
Tpr1g3388 606 TIGRFAM PPR: pentatricopeptide repeat domain 301 334 IPR002885 -
Tpr1g3388 606 TIGRFAM PPR: pentatricopeptide repeat domain 271 298 IPR002885 -
Tpr1g3388 606 TIGRFAM PPR: pentatricopeptide repeat domain 200 234 IPR002885 -
Tpr1g3388 606 TIGRFAM PPR: pentatricopeptide repeat domain 96 129 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3388 Tpr-Chr1 38243286 38246298 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3388 97 606 Glycoside Hydrolase AT3G49170 38.835 6.33e-130 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3388 - - lang:109350726 979.163