Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3377 ATGCGACGCACTCCTCCGACTATCCATTTCCTTGCCGCCACCGACACCGCCTTCTCCACCGCCACAATGTCTTCACGCCCCTATCACCGAGGTCACCGTAGAGGATACTCCGGCCGCTCAAACTCCGGCGGGAGAGGCCATTTTGTTACCGGAGACGATCACATACAGTCAGTTCGTGACGCCAATTCAGCACTCCGGCGAGGTGAGAGTGAAAATTTTGCGAATCAAACGCAGTTCCATCAGAATCCACCTTACGATCTGAGTCGTCATCCTCCTCCGGCGTTTTACTTTCAGAATCCACCTTACAATCCTCGTCCTCATCCACCGCCTCAATATCAGAATCCATCTTATACTCCAAGACCTCATCCTTATCCACATCCTCATCGGCCGCCACATTTTCGGCAGCCAAATGATCACCAACGTCAATTTCGTCCACAGCAGAATATTCGCCCAAAGGCTCCGGATCATCGAGAGTGGGAGGTTGCTTTGACGCCACCACCACCTCGTCATAGTGAAAGGTTTAAAGTCCTTTCCTATAATATATTGGCCGACTACCTCGCTATGGACCACTGGAGAAAACTTTATTATCACATACCTTCTTACATGTTGAACTGGCAGTGGAGAAAGAGTAAAATTATTTTTGAGCTTGGCTTGTGGTCTGCCGATATCATGTGCTTTCAGGAGGTTGATAGATTTGACGAGTTGGCGGAGGACTTGAAGGTTAAGGGATACAGAGGCATCTGGAAGATGCGTACCGGCAATCCAGTTGATGGTTGTGCAATCTTTTGGCGAACATCAAGGTTCAATTTGTTGTATGAAGAAAGCATTGAGTTCAATAGGTTTGGACTCAGAGACAATGTTGCTCAAATATGTGTACTAGAGTTCATAAATCAAAACGGATCTCTCCCACCCAGCTTGACAGGTTCTCGTAAGGTTGTTGTTTGCAACACTCATGTGCTTTACAATCCAAATAGAGGGGAAATTAAGCTTGGCCAGGTCAGAATCCTTCTGGATAAGGCTCGAGCTGTTTCTCAACTTTGGAATAACTCGCCTGTTATTATCTGCGGGGATTTTAATTGTACCCCTAAGAGTCCATTGTACAACTATATCGCAGAACAAAAGTTAGATCTATCTGGAATAGATAGGGATAAACTATCAGGGCAAGCTTCTGCTGTAATTCGCTCCCCATGGAAGTATGGTCCTAAGTCTAGTGAAAAACAATTTGATAATGGTTCAGTTCAGGTCACATCTGCTGAAGGTGACAAGGAAATTACTATTGAACAAAATAGTTCTTTGTCGGACATGCAGAATCCAAACACTGAGAGTAACAGTTTAGAGACTCAAAATACTCGCCCTGTTTTGGATATGTCTGATAAGACAAATATGCAGTGTAGCAGGGAGAGTGATGCATGTGCAGGAAAAGATACTCAGGAGGCTGTTGACTATAATAAGATTGTTGGTGAAGTTGATGACATGAAAGAAGTTCCAAATCCTTCTTATGATAACTGTAGGCTCCCAATTGATCATATAAATGATGATGAAATTCATGACATCACACCTATAACGTCTTCAGCTCTTGAGACAGTTCACACTGGCCCAACTGGGATGGGAGACACAGAACATATATCAGATGCTATCTCGACTTCATATCAAGAATCATTTAGTGAAAAATCCAACTTGCATGACCATAAAGGGAATAAGCATGTGGAGCCTGATTGTTCCCCAAACTCTCTTCAAGAAGGTGATCAAACTTCAGAGGTGAAAATAGATCTTGAGTCAACAGATCTTCTTAACCTAGAAGTATCTTCAAATAAACCATCCAGCATGACTTCAGTTTCTGAAGCTTTTGAAGCCCCTCATTCAGGGTATAGAGAAAGCTTGTCTTATGTGGCCATCACTAATGACCAAATGAATTGCTCATCAACTGCATATCCAGTTGACGAACCACAAAAACCTACCAATATTGACTTTACACTAAATGAAAAACTAGAGAAGTTTTCCTTTGATGAGATAGATAAAGCCGATGTAAGCAGTGGGAATACTGGTGAAGATGCCAACGATTTCATAAATGCCTTACATAATGCCGAAGAAGAAAGCAATGAAGTGGAGGATGACTTATCTCCAAGTCTGATTTCCAAATCTATTTATGCAAAGAAATCTACTTATGATCCATCATTATGGACCCCTGCTGAGATAGAAATTGCAACAGGAAATGCAGAGTGCATATTCTTGGAGCACCCTTTATCGCTCAAGAGCACATACACTGAAGCTGTGGACTCTTCAGGAACTAGAGACCCCAATGGTGAACCATTGGTAACCAGTTACAACAAGTGCTTCTTGGGCACTGTTGACTATATTTGGCGATCTGAAGGTCTGCAAACAACCAGAGTTCTTGCTCCAATACCTAAATGTGTCATGGAAAGCGCTCAAGGATACCCAACAAAGAAATGGGGTAGTGATCATATTGCCTTGGTTTCGGAATTGGCTTTCTTGGAAGATGGTACTGCAATCAGCAAGGATGTTGTATAG 2529 0.4294 MRRTPPTIHFLAATDTAFSTATMSSRPYHRGHRRGYSGRSNSGGRGHFVTGDDHIQSVRDANSALRRGESENFANQTQFHQNPPYDLSRHPPPAFYFQNPPYNPRPHPPPQYQNPSYTPRPHPYPHPHRPPHFRQPNDHQRQFRPQQNIRPKAPDHREWEVALTPPPPRHSERFKVLSYNILADYLAMDHWRKLYYHIPSYMLNWQWRKSKIIFELGLWSADIMCFQEVDRFDELAEDLKVKGYRGIWKMRTGNPVDGCAIFWRTSRFNLLYEESIEFNRFGLRDNVAQICVLEFINQNGSLPPSLTGSRKVVVCNTHVLYNPNRGEIKLGQVRILLDKARAVSQLWNNSPVIICGDFNCTPKSPLYNYIAEQKLDLSGIDRDKLSGQASAVIRSPWKYGPKSSEKQFDNGSVQVTSAEGDKEITIEQNSSLSDMQNPNTESNSLETQNTRPVLDMSDKTNMQCSRESDACAGKDTQEAVDYNKIVGEVDDMKEVPNPSYDNCRLPIDHINDDEIHDITPITSSALETVHTGPTGMGDTEHISDAISTSYQESFSEKSNLHDHKGNKHVEPDCSPNSLQEGDQTSEVKIDLESTDLLNLEVSSNKPSSMTSVSEAFEAPHSGYRESLSYVAITNDQMNCSSTAYPVDEPQKPTNIDFTLNEKLEKFSFDEIDKADVSSGNTGEDANDFINALHNAEEESNEVEDDLSPSLISKSIYAKKSTYDPSLWTPAEIEIATGNAECIFLEHPLSLKSTYTEAVDSSGTRDPNGEPLVTSYNKCFLGTVDYIWRSEGLQTTRVLAPIPKCVMESAQGYPTKKWGSDHIALVSELAFLEDGTAISKDVV* 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3377 842 SUPERFAMILY DNase I-like 166 376 IPR036691 -
Tpr1g3377 842 MobiDBLite consensus disorder prediction 22 43 - -
Tpr1g3377 842 Pfam Endonuclease/Exonuclease/phosphatase family 177 378 IPR005135 GO:0003824
Tpr1g3377 842 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 6 34 831 - -
Tpr1g3377 842 MobiDBLite consensus disorder prediction 556 570 - -
Tpr1g3377 842 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 34 831 - -
Tpr1g3377 842 Coils Coil 685 705 - -
Tpr1g3377 842 Gene3D Endonuclease/exonuclease/phosphatase 146 451 IPR036691 -
Tpr1g3377 842 Gene3D Endonuclease/exonuclease/phosphatase 670 839 IPR036691 -
Tpr1g3377 842 MobiDBLite consensus disorder prediction 549 583 - -
Tpr1g3377 842 MobiDBLite consensus disorder prediction 401 448 - -
Tpr1g3377 842 MobiDBLite consensus disorder prediction 405 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3377 Tpr-Chr1 38150162 38159435 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3377 239 373 EF-hand Containing Proteins AT1G02270 26.573 7.51e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3377 - - gmx:100810446 979.548