Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3360 ATGCATTCTCAGAAGCCTCATCGCATTTTATTCTCCCTTCGTCCATTGCTATCATCAACCTTCAAACCAAACCCTAACCCTAATCCCATTCCTTCGTCTCCATTCTCATCCTCTTCTTCCTCATGGCTTTCTCAACCCGGAAACCCACTCATCCACTGGCCATCACTCCCACCCACCCAAACCAAACCCGGTTCAACCCCAACCCTAAACCCCAACCCAAACTCCCCCACACCAAACCCCAATTTCTCCCCCAACGATTTCTCTCTCATTTCCAATCTCTTCACCAACTCATCCATCTCTCCCGGTTCATCTCTCCATACTGAACTTACCCTCACCGAAATCAAACCAACTTCCCCTCTCATCCGCGCCGTCTTCGATCACTTTGGCTCCTCTCCGAAACTACTTCACTCGCTTTATCTCTGGGCTGAGAATCAACCCGGGTTCAAACCGGATTCAGCTCTGTTTGATTCAGTCATCAACGTACTTGCGAAAATGAGGGAGTTTCATTCTGCTTGGAGTCTTGTTCTTGATCGAATTGATAGAGATGATGGAGAACAAGAAGAGAATTTGGTTTCTGTTGGTACTTTTGCTATCATGATTCGACGCTATGCTCGTGCAGATATGCACAAGGCTGCTATTAGGACATTTGAGTTTGCAAAAGATAAGAAGACAATTTTGAATTCGGCATCGGAAATGAGTTTGTTTGAGATATTGATTGATGCACTTTGCAAAGAAGGGTTTTGTAGGGAAGCTTCAGAGTATTTTCTTAGGAGAAAGGAGACGGATCTGGGCTGGGTTCCTTCGGTTCGGGTTTATAACATAATGTTAAATGGATGGTTTCGAGCGAGGAAACTCAAACATGCTGAGAGACTTTGGGAAGAGATGAAGGAGGAGAATGTGAGACCTAGTGTTGTGACATATGGTACCCTCGTGGAAGGATACTGTCGGATGCGCCGTGTTGAAAAGGCGCTTGAGATGATTGGTGAAATGACCAAAGATGGAATTGAACCAAATGCAATTGTATATAACCCCATAATTGATGCATTGGCAGAAGCTGGGAGATTTAAAGAGGCTTTGGGTATGATGGAGCGTTTTCATGTTTTGAAAATAGGTCCTACTCTTTCAACTTATAATTCTCTAGTGAAGGGTTTTTGTAAGGCAGGAGATCTTGAAGGTGCAAGTAAAATTCTTAAAAAGATGATAAGTAGAGGGTTCCTTCCAATCCCCACTACTTATAATTACTTTTTTAGGTACTTTTCAAGATGTGGAAAAGTTGAGGAAGGGATGAACTTGTATACCAAGATGATTGAATCTGGTCATGATCCAGATCGTCTAACTTACCATCTTGTGTTGAAGATGTTATGTGAAGAGGAGAAGTTAGAGTTGGCAGTTCAAGTTAGCAAGGAAATGAGGCACAAAGGACATGACATGGACTTGGCTACGAGTACCATGTTAACTCATTTACTATGCAAAATGCATAAGTTGGAAGAGGCTTTTGCAGAATTTGAGGACATGATAAGAAGAGGTTTAATTCCTCAATATCTTACATTTCAAAAATTGAATGTTGAGTTAAAGAAACAAGGTATGACTGAAATGGCTCAAAAACTTTGCCAATTGATGTCGTCTGTTCCCCATTCTACCAACTTGCCAAATACATATGGTGAAGTCAGAGATGATGCACATGCACGTAGAAAATCTATAATTCAAAAAGCCAAAGCAGTTTCTGATTTGCTGAAGGACCCCAAAGAACTTGATAAGTTTAGAAGTTCATCAGAAAATGCTGTCTCAAGTGCATCTGCGAAAACGATAGAGGGTAGATAG 1821 0.4179 MHSQKPHRILFSLRPLLSSTFKPNPNPNPIPSSPFSSSSSSWLSQPGNPLIHWPSLPPTQTKPGSTPTLNPNPNSPTPNPNFSPNDFSLISNLFTNSSISPGSSLHTELTLTEIKPTSPLIRAVFDHFGSSPKLLHSLYLWAENQPGFKPDSALFDSVINVLAKMREFHSAWSLVLDRIDRDDGEQEENLVSVGTFAIMIRRYARADMHKAAIRTFEFAKDKKTILNSASEMSLFEILIDALCKEGFCREASEYFLRRKETDLGWVPSVRVYNIMLNGWFRARKLKHAERLWEEMKEENVRPSVVTYGTLVEGYCRMRRVEKALEMIGEMTKDGIEPNAIVYNPIIDALAEAGRFKEALGMMERFHVLKIGPTLSTYNSLVKGFCKAGDLEGASKILKKMISRGFLPIPTTYNYFFRYFSRCGKVEEGMNLYTKMIESGHDPDRLTYHLVLKMLCEEEKLELAVQVSKEMRHKGHDMDLATSTMLTHLLCKMHKLEEAFAEFEDMIRRGLIPQYLTFQKLNVELKKQGMTEMAQKLCQLMSSVPHSTNLPNTYGEVRDDAHARRKSIIQKAKAVSDLLKDPKELDKFRSSSENAVSSASAKTIEGR* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3360 606 Gene3D Tetratricopeptide repeat domain 120 250 IPR011990 GO:0005515
Tpr1g3360 606 Gene3D Tetratricopeptide repeat domain 402 583 IPR011990 GO:0005515
Tpr1g3360 606 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 98 603 - -
Tpr1g3360 606 Pfam PPR repeat 372 400 IPR002885 -
Tpr1g3360 606 Pfam PPR repeat 333 363 IPR002885 -
Tpr1g3360 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Tpr1g3360 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Tpr1g3360 606 TIGRFAM PPR: pentatricopeptide repeat domain 411 443 IPR002885 -
Tpr1g3360 606 TIGRFAM PPR: pentatricopeptide repeat domain 376 407 IPR002885 -
Tpr1g3360 606 TIGRFAM PPR: pentatricopeptide repeat domain 305 339 IPR002885 -
Tpr1g3360 606 TIGRFAM PPR: pentatricopeptide repeat domain 271 303 IPR002885 -
Tpr1g3360 606 TIGRFAM PPR: pentatricopeptide repeat domain 340 373 IPR002885 -
Tpr1g3360 606 Pfam PPR repeat family 267 316 IPR002885 -
Tpr1g3360 606 Pfam PPR repeat family 411 455 IPR002885 -
Tpr1g3360 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 443 477 IPR002885 -
Tpr1g3360 606 MobiDBLite consensus disorder prediction 22 43 - -
Tpr1g3360 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
Tpr1g3360 606 PANTHER LEAF PROTEIN-LIKE 98 603 - -
Tpr1g3360 606 SUPERFAMILY HCP-like 269 458 - -
Tpr1g3360 606 Gene3D Tetratricopeptide repeat domain 330 401 IPR011990 GO:0005515
Tpr1g3360 606 Gene3D Tetratricopeptide repeat domain 251 329 IPR011990 GO:0005515
Tpr1g3360 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 478 512 IPR002885 -
Tpr1g3360 606 Pfam PPR repeat 483 510 IPR002885 -
Tpr1g3360 606 Pfam PPR repeat 237 256 IPR002885 -
Tpr1g3360 606 MobiDBLite consensus disorder prediction 587 606 - -
Tpr1g3360 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 372 IPR002885 -
Tpr1g3360 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3360 Tpr-Chr1 37959684 37963271 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3360 91 540 Miscellaneous Gene Families AT4G11690 25.442 1.80e-42 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3360 - - gmx:100793484 811.216