Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3320 ATGGCAACAGTTTCAAAGATATCGTCACTGTTATCATCATCCAAACCTAAACCTAAACTCATTTTTCATCATATCAATTCTTTTCTTCTCTCTGCTTCAAATCTCAAAGCCCTTAGCACCACCGCCGGCGGCGGCGGAGGTATGAGAACAACAAAGACGAAGAAAACAGAAGCAGCACTTGCAAAGGAAAAAAGACGAACTCGTTCCGATAAACAACTTGACGAAGATACAATAGTTGAACTTTACAACAATAATTCGCATCTTCATATTCCTGTTTTGCTTTCTGAAGTTTTGGATGTCTTCTCAAATTGTTCGTTAACTTCTTTTGTTGATTGTACTCTTGGTGCTGCTGGTCACTCCACCAATGTGATTAGAGGTCATCCAGAGTTGAAGTATTTTGTTGGGATGGATGTGGACCCTGTGGCAAGTGACGTCGCAAAATCACGCATCAGTTCAGTTTTGGACGATAGGAAGTCTAGTGTGAAAGTATTTACAGTGTTAAGGAATTTTAGACACGTCAAGTCTGTGCTTAGAGGAACGGGCGAGGAACACTTAGAGCCATCGTCTGTTAATGGCATCTTGATGGACCTGGGAATGTCATCTATGCAGGTGGACGATCCTCAAAGAGGATTCAGTGTGCTTAATGATGGACCACTTGATATGCGCATGGATCCTCAGGCAAGCCTCAAAGCAGAAGACATATTAAATTCTTGGCCAGATTCTGAAGTGGGCCGTATCCTAAGGGATTATGGGGAAGAAAGTAATTGGCGTACTCTGCAGAAGAAAATTGTCCAAGCCCGTTTACAAGGTGGATTACATTCCACTACTGACTTGCTGGATCTTATTCGGCGTGTGACTCCTGCTGCAATGAAAGGTGGACGACAAGGTTGGATAAAAACAGCAACCCGTGTATTTCAAGCATTAAGAATCGCTGTCAATGATGAACTGAAGACTCTTGAGGACTCCCTGTATTCTTGTTTTGACTGCCTTGCACCTGGGGGCAGACTTGCTGTCATATCTTTTCACAGTTTGGAGGACAGAATTGTGAAGCAGACATTTCTTAATATAATTAAAAGGAATGATGACATTCCCGAAGGGGAGAGCTGCAATAGTGATCTTAGGAAGATAATTGATGAAATCAAAGAAAAAGAAGCATGGATAAAACAAGTACTGCATGGATCAGATGGAATAATTCTCACAAAACGACCAATCACGCCGTCGGAAGAAGAAGAGAGCTTGAACCGCCGATGTAGAAGTGCAAAGCTCAGAGTTATTCAGAAGCTTTGA 1287 0.4227 MATVSKISSLLSSSKPKPKLIFHHINSFLLSASNLKALSTTAGGGGGMRTTKTKKTEAALAKEKRRTRSDKQLDEDTIVELYNNNSHLHIPVLLSEVLDVFSNCSLTSFVDCTLGAAGHSTNVIRGHPELKYFVGMDVDPVASDVAKSRISSVLDDRKSSVKVFTVLRNFRHVKSVLRGTGEEHLEPSSVNGILMDLGMSSMQVDDPQRGFSVLNDGPLDMRMDPQASLKAEDILNSWPDSEVGRILRDYGEESNWRTLQKKIVQARLQGGLHSTTDLLDLIRRVTPAAMKGGRQGWIKTATRVFQALRIAVNDELKTLEDSLYSCFDCLAPGGRLAVISFHSLEDRIVKQTFLNIIKRNDDIPEGESCNSDLRKIIDEIKEKEAWIKQVLHGSDGIILTKRPITPSEEEESLNRRCRSAKLRVIQKL* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3320 428 SUPERFAMILY Putative methyltransferase TM0872, insert domain 209 313 IPR023397 GO:0008168
Tpr1g3320 428 Gene3D Putative methyltransferase TM0872, insert domain 207 315 IPR023397 GO:0008168
Tpr1g3320 428 MobiDBLite consensus disorder prediction 55 69 - -
Tpr1g3320 428 Gene3D Vaccinia Virus protein VP39 89 425 IPR029063 -
Tpr1g3320 428 PANTHER S-ADENOSYL-METHYLTRANSFERASE MRAW 65 428 IPR002903 GO:0008168
Tpr1g3320 428 Hamap Ribosomal RNA small subunit methyltransferase H [rsmH]. 89 428 IPR002903 GO:0008168
Tpr1g3320 428 TIGRFAM TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 85 427 IPR002903 GO:0008168
Tpr1g3320 428 MobiDBLite consensus disorder prediction 41 69 - -
Tpr1g3320 428 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 89 428 IPR029063 -
Tpr1g3320 428 Pfam MraW methylase family 88 427 IPR002903 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3320 Tpr-Chr1 37574935 37578936 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3320 K03438 - gmx:100803819 568.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3320 1 37574935 37578936 Tpr1g3320 1 37574935 37578936 ECH