Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3317 ATGGCGGAAGAGAAAGCGGTTACTACCGCCGACGCCGAGAAGAAAGAGAAGACGAATGACACGGTTACTACTACTACTAATGGAAGCGGAAAGAAGAAGCGTAAAGGTTTCATTTCGCGAATTTGGAATTTTGTATTTAGGTCTAATAAAGATGATTTTGAGAAGAGGCTTCAGTGTATTTCTAAGGAAGAAGCTTCTGTTATGAGTAGAATGAACATCAGATCCCGTTCATGGAGGCGTACCTCTCGCGACATTATTATTTTTTCTATTTTATTTGAGGTCTTTGCTGTAGCTTATGCGGTTATGACAACAAGATCCATAGATATGAATTGGAAAATGAGGGCGATTCGAGTTTTTCCGATGTTTCTCTTTCCTGCCTTATCATATGCTACTTATTCAACATTTGTAAGCTTCATAAGGATGTGTGACCGCAGGGACCAGAAAATTCTTGAAAGGCTGAGAACTGAAAGGAAGGAAAAAATTGACGAGCTCAAAGAGAAGACAAATTATTACAGTACTCAACAACTCATTCAGAAATATGACACAGACCCAGCAGCAAAGGCAGCTGCTGCAACTGTTTTGGCATCCAAGCTGGGTGCAGATTCGGGTTTGAAAGTGTATATGGAAGATAAATCTAAATCTGGTGCTCCAACAGGAAAGCCCAACAATGTTGAACCTGTGCAGTCTAGTGGACTTCAAAATCGCAAACAAGGGCAAACTCAATCCACTAGTCCGGGGACAACTACCCCAAATCATCCTGATCAACAATTAATTGCTTCAGGGGGAGCTGATCAAACTCAGACTCGTGTGCAGAAACAGCCGGTAGTTGTTGAGCATCACCAACCTCAAAGCTCAACAAAGTATGATGGAGGTTTGGTTGCTCGAATTGCAGCATTGCTGGTTGGCGAAGATCCAATGCAGTCCTACGCACTCATATGTGGTAACTGCTATATGCATAATGGCCTTGCTCGAAGAGAGGAGTTTCCATTTATCACTTACTACTGCCCACACTGTCACGCCCTGAACAAACCAAAGCTATCGGCTGAGCCCATCTCTGGTTTTAATTTGCCAAACACTGGTTCCCCAAAAACTGATAGAGAGGCAGTTAAAAATGCTAGTATCACTGCTTCTGACAGCTTGGTCGGAAACATTAAACCAGTAGATGCTACCCCGGAGATCAAGCGCATATCTGAAGAAGCTACCACTGAGATCAAGCCCATATCTGAAGAAGCTATCCCTGAGGTCGAGCACATATCTGAGGAAGCTACAACTGAGATCAAGCACATATCTGAAGAAGCTATCCCTGAGGTCGAGCACATATCTGAAGGAGCTACCCCCGAGGTCGAGCACATATCTGAAGGAGCTAGTTTAGGGAAAGAAGAAAACTAG 1389 0.4348 MAEEKAVTTADAEKKEKTNDTVTTTTNGSGKKKRKGFISRIWNFVFRSNKDDFEKRLQCISKEEASVMSRMNIRSRSWRRTSRDIIIFSILFEVFAVAYAVMTTRSIDMNWKMRAIRVFPMFLFPALSYATYSTFVSFIRMCDRRDQKILERLRTERKEKIDELKEKTNYYSTQQLIQKYDTDPAAKAAAATVLASKLGADSGLKVYMEDKSKSGAPTGKPNNVEPVQSSGLQNRKQGQTQSTSPGTTTPNHPDQQLIASGGADQTQTRVQKQPVVVEHHQPQSSTKYDGGLVARIAALLVGEDPMQSYALICGNCYMHNGLARREEFPFITYYCPHCHALNKPKLSAEPISGFNLPNTGSPKTDREAVKNASITASDSLVGNIKPVDATPEIKRISEEATTEIKPISEEAIPEVEHISEEATTEIKHISEEAIPEVEHISEGATPEVEHISEGASLGKEEN* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3317 462 PANTHER ENDOPLASMIC RETICULUM JUNCTION FORMATION PROTEIN LUNAPARK 19 402 IPR040115 GO:0071786
Tpr1g3317 462 MobiDBLite consensus disorder prediction 1 20 - -
Tpr1g3317 462 Coils Coil 147 170 - -
Tpr1g3317 462 MobiDBLite consensus disorder prediction 438 462 - -
Tpr1g3317 462 MobiDBLite consensus disorder prediction 212 286 - -
Tpr1g3317 462 Pfam Predicted integral membrane zinc-ribbon metal-binding protein 293 342 IPR019273 -
Tpr1g3317 462 PANTHER INTEGRAL MEMBRANE METAL-BINDING FAMILY PROTEIN (DUF2296) 19 402 - -
Tpr1g3317 462 MobiDBLite consensus disorder prediction 216 286 - -
Tpr1g3317 462 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3317 Tpr-Chr1 37552199 37558117 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3317 K23292 - gmx:100815496 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3317 1 37552199 37558117 Tpr7g0524 7 4422399 4426269 PCT