Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3316 ATGGGAACTGCCGCATTCCAGCTTTGTGCAGGTTTAAATTTAAGCGCTTCCAATCATCTTCATGTTCAAGGGAGTACCAATTCCAAGTTCGCACCTCAATCAGTGAGAGCACTTCCTATTCGTATATTATCCGTGGGAAAGAAGCGATCACGTGGATTGCAACTCGTGGTTGACGAGTATGTTGAAAAAATCAAATACTATTGCAGTGTTGAGGATGTTCTAATTCGATCAAATCCCAGAAATGCACGTGACCAAAGGGCTCAGGTTGACGACGAAGACATGGCAGTGATGAATCTTATAAGGTCTGATGATTGGGTTGTGATGTTGGATGAACACGGAAGAGATCTACGGTCTGAGCAAATGGCAGAGTTGGTGGCTGATGCAGGAAATACTGGTGCTTCACGTATATCTTTCTGTATTGGTGGACCCTATGGTCATGGAAGAAAAATAAGGGAACGTGCTAACTTATCAATCAAGTTATCTTCAATGGTCTTAAATCATCAAATAGCATTACTTGTTCTTGTAGAACAGCTTTACAGGTCATGGACAATTTTAAGGGGACAAAAGTACCATCATTAG 579 0.4162 MGTAAFQLCAGLNLSASNHLHVQGSTNSKFAPQSVRALPIRILSVGKKRSRGLQLVVDEYVEKIKYYCSVEDVLIRSNPRNARDQRAQVDDEDMAVMNLIRSDDWVVMLDEHGRDLRSEQMAELVADAGNTGASRISFCIGGPYGHGRKIRERANLSIKLSSMVLNHQIALLVLVEQLYRSWTILRGQKYHH* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3316 192 SUPERFAMILY alpha/beta knot 39 190 IPR029028 -
Tpr1g3316 192 Pfam Predicted SPOUT methyltransferase 40 191 IPR003742 GO:0006364|GO:0008168
Tpr1g3316 192 SFLD SPOUT Methyltransferase 15 192 - -
Tpr1g3316 192 PANTHER METHYLTRANSFERASE 12 192 IPR003742 GO:0006364|GO:0008168
Tpr1g3316 192 CDD RlmH-like 40 192 IPR003742 GO:0006364|GO:0008168
Tpr1g3316 192 Hamap Ribosomal RNA large subunit methyltransferase H [rlmH]. 38 192 IPR003742 GO:0006364|GO:0008168
Tpr1g3316 192 Gene3D - 37 192 IPR029026 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3316 K00783 - gmx:100796609 292.737