Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3294 ATGCTTCTAAACCAAGCTTTCTCTTCATTCCACTCAAAACCACTTCGTTCTTCATACATTCCTCTCTCTTCTTCTTGTTCTTCATCATCTTCTCCAATACGGCGTCGTTCAGTGAAAACAACCATTCCACGCAAAACAAATCTCAAAATCCTCACAACACGCATAGTTCAACTCACTCGTCGTAAACAGCTTCGTCAGATTTTCAATGAAATTGAAGTTGCGAAGAAACAGTTTTGGAAGTTGAATACGATTGTTATGAATGCGGTTATTGAAGCTTGTGTTCGTTGTGGTGATATTGAATCAGCTATTAGGATTTTTGATGAGATGAAAAATCCTGAATCTTGTGGTGTGGATACTGTTACTTATGCTACCATTTTGAAGGGTTTAGGCAAGGCACATAGATTTGATGAAGCTTTTCAATTGCTTGAATCTGTCGAAAATGGTACTGCCGTGGGAAGTCCAAAGTTGTCAGCACCATTGGTCTTCGGTTTGCTAAATGCCTTAACAGAAGCAGGAGACTTGCGTCGTGCAAATGGCCTCCTTGCCTGTTATGGTTCTGTGCTTCGTGAAGGCGAACATTTTTCAGTCTCAGTATACAACCTTCTAATAAAGGGGCATATAAACTCAGGCTGTCCTGACACTGCAATAAACATGCTCAATGAAATTTTACATCAAGGAATAATGCCCGACAGGCTCACATATAACACACTGATTTTAGCATGTGTTCATAGTGAAAAGTTGGATGTTGCCATGCAATTATTTGCGGAAATGAAGGAAAAAGCGCAGAAATTCATCCATGGTGATCTGTTTCCAGATATTGTTACATACACAACATTGCTCAAGGGTTTTGGGCAGGCAAAGGATCTCGTTACAGTTTTGCAAATAGTGCTGGAAATGAAATCATGTTCTGAGTTATACATTGATAGAACTGCTTACACTGCAATGGTTGACGCTTTACTAAGATGTGGCTCTGTTAAGGGTGCTCTGTGTATTTTTGGAGAAATACAGAAGCAGATTGGTTGTAAGCAAGAGTTGAGACCAAAGCCTCATCTCTATCTTTCTATGATGCGTGCCTTTGCTTTTCAAGGAGATTATGATCTGGTTAAAAATTTGCATAAGCGGATTTTACCAGATACAGTAGGAAGAATCCTACCAGTTTCCCAAGAAGAAGCCGACCACCTTCTAATGGAAGCAGCCCTGAACGCTGGCCAGGTCGATGTTGCTATTAAAACTCTTACATATATTCTTTCAAGATGGAAGGGCATATCCTGGACAAGTCATGGAGGAATGGTTGCTTCTCGTATTGAGGCCTTATTGGGATTCTCGGCATCTTTATTCAATCCTTTCTTACTTCCTCAGGTTTTGCCTTCTGAACCGGTTGAGGGTTTCATGATACCATTTGAAGAAACGCGGCCACTACAAGGAACCATAAAGCTGAGGGATGTGGTATCACGTTTCTTTAATGATGCAGTAGTTCCTATTGTAGATGAGTGGGGCAGTTGTACAGGGCTTTTGCACCGCGAAGACTGCAATCAGTTGGATGCTCCACTTTCAACCATGATGAGAAGCCCTCCTCCCAGTGTTTCAGCTTCAACATCTGTTGGTCATGTAATTGACTTAATTTTGGAGAAGCGTTACCCAATGGTTATCATTGTAAATTGCACCGATGTGTTTGCTACTACATACGGCTGTAGAGCGATTGGAGTTTTTACATTAGTACAATTGAATAGGCTTATCAAACCTGTATCTGAAGAGAAAAGGGATAGACCTTTCACTCTGCAGAAGATGATAACATAA 1797 0.4085 MLLNQAFSSFHSKPLRSSYIPLSSSCSSSSSPIRRRSVKTTIPRKTNLKILTTRIVQLTRRKQLRQIFNEIEVAKKQFWKLNTIVMNAVIEACVRCGDIESAIRIFDEMKNPESCGVDTVTYATILKGLGKAHRFDEAFQLLESVENGTAVGSPKLSAPLVFGLLNALTEAGDLRRANGLLACYGSVLREGEHFSVSVYNLLIKGHINSGCPDTAINMLNEILHQGIMPDRLTYNTLILACVHSEKLDVAMQLFAEMKEKAQKFIHGDLFPDIVTYTTLLKGFGQAKDLVTVLQIVLEMKSCSELYIDRTAYTAMVDALLRCGSVKGALCIFGEIQKQIGCKQELRPKPHLYLSMMRAFAFQGDYDLVKNLHKRILPDTVGRILPVSQEEADHLLMEAALNAGQVDVAIKTLTYILSRWKGISWTSHGGMVASRIEALLGFSASLFNPFLLPQVLPSEPVEGFMIPFEETRPLQGTIKLRDVVSRFFNDAVVPIVDEWGSCTGLLHREDCNQLDAPLSTMMRSPPPSVSASTSVGHVIDLILEKRYPMVIIVNCTDVFATTYGCRAIGVFTLVQLNRLIKPVSEEKRDRPFTLQKMIT* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3294 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 264 IPR002885 -
Tpr1g3294 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 195 229 IPR002885 -
Tpr1g3294 598 TIGRFAM PPR: pentatricopeptide repeat domain 311 342 IPR002885 -
Tpr1g3294 598 TIGRFAM PPR: pentatricopeptide repeat domain 120 144 IPR002885 -
Tpr1g3294 598 TIGRFAM PPR: pentatricopeptide repeat domain 198 230 IPR002885 -
Tpr1g3294 598 TIGRFAM PPR: pentatricopeptide repeat domain 274 302 IPR002885 -
Tpr1g3294 598 TIGRFAM PPR: pentatricopeptide repeat domain 233 260 IPR002885 -
Tpr1g3294 598 TIGRFAM PPR: pentatricopeptide repeat domain 86 110 IPR002885 -
Tpr1g3294 598 CDD CBS_pair_SF 476 553 - -
Tpr1g3294 598 Pfam PPR repeat 311 337 IPR002885 -
Tpr1g3294 598 ProSiteProfiles CBS domain profile. 520 589 IPR000644 -
Tpr1g3294 598 PANTHER OS09G0431600 PROTEIN 18 586 IPR044781 -
Tpr1g3294 598 SUPERFAMILY CBS-domain pair 454 553 IPR046342 -
Tpr1g3294 598 Gene3D Tetratricopeptide repeat domain 27 155 IPR011990 GO:0005515
Tpr1g3294 598 Pfam Pentatricopeptide repeat domain 268 300 IPR002885 -
Tpr1g3294 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 118 148 IPR002885 -
Tpr1g3294 598 Pfam PPR repeat family 82 130 IPR002885 -
Tpr1g3294 598 Pfam PPR repeat family 196 241 IPR002885 -
Tpr1g3294 598 Gene3D Tetratricopeptide repeat domain 163 263 IPR011990 GO:0005515
Tpr1g3294 598 Gene3D Tetratricopeptide repeat domain 264 437 IPR011990 GO:0005515
Tpr1g3294 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 82 112 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3294 Tpr-Chr1 37355060 37360244 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3294 42 376 Miscellaneous Gene Families AT4G11690 24.128 6.78e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3294 - - mtr:MTR_1g009650 988.023