Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3284 ATGTCTCGTGTGTATGTGGGTAATCTGGATTCGAGAGTTACCGAGAGGGACCTTGAAGATGAATTCCGTATTTACGGTGTCATTCGAAGTGTTTGGGTTGCTCGCAGACCACCTGGCTATGCTTTTATTGACTTCGATGACCGCAGAGATGCGCAGGATGCTATTCGCGAATTAGATGGTAAGAATGGCTGGAGGGTAGAGCTCTCTCACAATTCTAGAAACGGTGGTAGCGGTGGAGGAGGAGGCGGCGGTCGTGGTCGCGGAGGTGGTGGTGGTGGTTCTGATTTGAAGTGTTATGAGTGTGGTGAACCTGGCCACTTTGCTCGTGAATGTCGCAATCGTGGTAGTGGTGGAGGAAGACGCCGTAGCCGTAGTCCACCTAGATTTCGCAGGAGTCCAAGTTATGGGCGAAGGAGTTACAGTCCTCGTGGGCGGTCACCTAGGCGCCGCAGTGTGTCTCCTCGTGGACGCAGCTACAGCAGATCACCACCTCCTTACCGTGGGCGCGAGGAAGTGCCATATGCTAATGGAAATGGCATTAGGGATCGCCGCAGAAGCAGAAGTTGA 567 0.5344 MSRVYVGNLDSRVTERDLEDEFRIYGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRNGGSGGGGGGGRGRGGGGGGSDLKCYECGEPGHFARECRNRGSGGGRRRSRSPPRFRRSPSYGRRSYSPRGRSPRRRSVSPRGRSYSRSPPPYRGREEVPYANGNGIRDRRRSRS* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3284 188 Pfam Zinc knuckle 97 112 IPR001878 GO:0003676|GO:0008270
Tpr1g3284 188 SMART rrm1_1 3 69 IPR000504 GO:0003723
Tpr1g3284 188 ProSiteProfiles Zinc finger CCHC-type profile. 97 113 IPR001878 GO:0003676|GO:0008270
Tpr1g3284 188 SUPERFAMILY RNA-binding domain, RBD 3 92 IPR035979 GO:0003676
Tpr1g3284 188 SMART c2hcfinal6 97 113 IPR001878 GO:0003676|GO:0008270
Tpr1g3284 188 SUPERFAMILY Retrovirus zinc finger-like domains 79 118 IPR036875 GO:0003676|GO:0008270
Tpr1g3284 188 MobiDBLite consensus disorder prediction 66 92 - -
Tpr1g3284 188 MobiDBLite consensus disorder prediction 112 188 - -
Tpr1g3284 188 Gene3D - 1 97 IPR012677 -
Tpr1g3284 188 Gene3D - 98 151 - -
Tpr1g3284 188 CDD RRM_SRSF3_like 3 71 - -
Tpr1g3284 188 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 180 - -
Tpr1g3284 188 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Tpr1g3284 188 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Tpr1g3284 188 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RSZ22A-LIKE ISOFORM X1 2 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3284 Tpr-Chr1 37259166 37262252 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3284 K12896 - sspl:121745482 225.328