Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3258 ATGTCTTCTTCCCCGAGGAATCGCCTCAACCAGTTTTATACTACGAAGAAAAGGAAAGCAATTTCGCCTGTTACAAAGCTTAGGAGAATTGAGAAAGGTGCAAAGATTGTGGCTGATGGGTCTCCAAGTGCTAAAGGTTCGTTAGTAAATTACTTGGTTCCGTCTCAGGGTGAAACGGATGAGGATCCGGTGAGGCCGGATTTGGTTCGGAGAAAATTGGGATTAGATATTGGTAATTCTGTTGACAATGGACTTGATAAGCATCCTCTTTCGTTGGCTCGAGAGGTTCAACGTTCTTATGCTACTTGTGGGGGGATTGAAAATGAAGTGTCTGTGGTTGATGATTCTGTTCAGGAAAAGAACTTAAGTGATTTTGAACATGATGGTGAAAAATCGGAGCTCAAACAGTTTAAAGCAGAGCTTTTTTCTCTCTATTGCGGTGAACTGCATCCGGGCATTAGTTCACCATTGGATAAGGGGGTGAAAGGCCACAAGAGACACGATTCTCTGACAGTAGTAGAGGAAGATAGTAGCAGTATGGTGCAGAAGTGTGATGACACTAGTGAGCCACATTTTGGTCGTGAAAACATTTCGAGTGACAAGATCTATAATACTATGAAAAGTGTTCCAGTCTGCTCTGCAAAGGTTTCTAGTGGTGGTGATACTAATGCCTTTGACACAGGTTTTAGAAAATGTAGTAATACTCCTACGTCTATGAATATGGCTGAATGCAAAACACCAGGATCTTTGATTGTTAAAGCATGTGTTAAGGGGACCCCAAAGTCAACACGTGGAAGCTCAATGTTTTCACCCGGAGAGGCTTTCTGGGAGGAAGCAATTCAACTTGCTGATGGTTTGGTTGTTCCCATGGGTAATGATTCTTCTAAGGTTATGGAAGAAAGTAATGTGATGGGAGGCCAAGTTGAGATGAAGAACTCGTGTAATTTACAAAATTATGATGGTAAGGCAAGGAAAATATTGGATCAAAGTAAAACCATAGGGTTGACTGAGATGCACACAAAAGATTCTATAAAAGAAGCATCCAGCCTTCCCGTTAAGCATTTTGATTTTTCGTATGAGGACAATAATATGGACGAAAATACCCTTCAAAATTGTCGTGTCGATAATCTGGTCAATGTTACTTGTGTGGCTGGAAAGCAGTATGAATCTATTTCTGTGGCAAGTCATACATATGAACAGACATATAAAGTGCAGGAGAAGATTTTAGCAGATTCATCAGGCAACAGAGTGAGAAAGGATAATTTTTTCAATATAACATCTAATAATTTTAATTCACCCAACAATGAGGCCAGGAAAACAATTATACCTGCATCTCTTGAAGCCAAAACTCCTTCAAGTCATGTGTCACTTGATGATCAGTTAGACCTACATAGCTGGCTTCCACCTGAAATATGCAACATCTATAGAAAGAAAGGCATTTCAAAACTTTACAATTGGCAGGTTGACTGCCTTCGGGTGGATGGTGTCCTACAAAGAAGAAATCTTGTGTATTGTGCTTCTACAAGTGCTGGAAAGAGTTTTGTTGCTGAGATTTTAATGTTGCGGAGGGTGATAACAACTGGAAAAATGGCAATACTTGTTCTTCCGTATGTATCAATTTGTGCAGAAAAGGCAGAACATCTTGAAAAACTGCTTGAGCCACTTGGTAAACATGTTCGTAGTTATTATGGGAACCAAGGTGGTGGAACACTTCCTAAAGATACTTCTGTAGCTGTATGCACTATAGAGAAGGCAAACTCACTAATCAATAGATTATTGGAAGAGGGCCGTCTGTCAGAAATGGGAATCATTGTGATAGACGAACTGCATATGGTTGGTGATCCACGTAGAGGTTATCTTCTAGAACTTATGTTGACAAAGCTTCGCTATGCAGCAGGGGAGGGCATTTCAAAATCAAGTGATGGAGAGAGTTCAGGTGGAAGCAGTGACAGGACCGATCCTGCTCAAGGTTTGCAAATTGTTGGAATGAGTGCAACAATGCCAAATGTTGCAGCAGTTGCTGACTGGCTTCAAGCAGCACTATACCAGACAGAGTTCCGGCCAGTTCCTTTAGAAGAATATATTAAAGTTGGTAATTCCATTTATAACAAGAGTATGGAACTTTCTAGAACAATGCCAAAAGGAGCTGACCTTGGTGGCAAGGATCCAGATCATGTTGTTGAACTCTGTAATGAGATCGTTCAAGAGGGACAGTCAGTGTTAATATTTTGCTCTAGCCGTAAGGGTTGTGAATCAACTGCCAGACACGTTGCAAAGTTCCTCAAAAGCTTTACTGTTGATATTAATGAGAATAATTGCGAGTTTGCTGATATTACTTCTGCTATTAGCTCCTTGAGAAAGTGCCCTGCTGGGTTGGACCCCATATTCGAAGAAACTCTTCCAGCTGGTGTTGCATTTCACCATGCTGGCCTTACGGTTGAGGAACGAGAGATTATTGAAACTTGTTATCGGAAAGGTCTTTTACGTGTCTTAACCGCCACTTCAACCTTAGCAGCCGGAGTTAATCTACCTGCTAGGAGGGTAATTTTCCGCCAACCTAGAATTGGTTGTGATTTTATTGATGGGACGAGGTACATGCAGATGGCTGGTCGTGCTGGTCGAACTGGAATCGATACCAAAGGAGAAAGTGTACTCATCTGCAAACCTGAAGAGTTAAAAAAAATTATGGGACTTCTGAATGAAAGCTGCCCACCATTACATTCCTGTTTATCTGAAGATTTAAATGGAATGACTCATGCGATCTTAGAAGTGGTTGCTGGAGGCATAGTTCAAACTGCTAATGACATTAACCGGTATGTTAGATGTACTCTTTTGAACTCCACGAGACCATTTCTGGACGTGGTGAAATCTGCTCAAGAATCTCTAAGATGGTTGTGCCAAAGAAAATTTCTTGAATGGAGTGAAGACACTAAACTCTACAGTACCACACCTCTTGGACGTGCATCTTTTGGCAGTTCTCTCTGTCCGGAAGAATCACTTATTGTGTTGGCTGATCTTTCAAGGGCAAGGGAAGGATTTGTCCTTGCATCTGACTTGCATTTGGTTTATTTGGTGACACCAATCAATGTTGATGTTGAGCCAGATTGGGAATTGTACTATGAGCGTTTTGTGAAATTGTCTCCTCTTGATCAGTCAGTTGGCAATCGAGTAGGTGTGACAGAACCATTCTTGATGCGTATGGCACATGGTGGACCAATGGGTTCAAACAAGACAAGATGGTTGCCCAATAAACGGAAAAGTCAACATGGGATCTCCAGTGGAACTGTTAACTCAGATGATCAAACACTTCGTGTCTGTAGAAGATTCTATGTTGCTCTCATTTTATCACATTTAGTACAGGAAATTCCTGTGGGCGAGGTTTGTGAAGCATTTAAAGTTGCTAGAGGAATGGTTCAAGGTTTGCAAGAAAATGCTGGTCGGTTTGCATCTATGGTTACTGTGTTCTGTGAGAGGTTGGGGTGGCATGATCTTGAAGGCTTAGTCTCCAAGTTTCAAAACCGTGTGTCATTTGGAGTTAGAGCAGAAGTTGTTGAGCTTACCACCATTCCCTTTGTTAAAGGCTCTCGAGCAAGAGCACTCTACAAAGCAGGTTTACGCACACCTCTTGCAATTGCCGAAGCATCCATTCCTGAAATAGTAAAAGCACTTTTTGAATCTTCATCATGGGCCACAGAAGGTTCTGCACAAAGGAGCTTACAATTTGGTGTAGCAAAGAAGATAAAGAATGGTGCTCGCAAGATTGTTCTTGATAAAGCTGAAGAAGCAAGGGTTGCTGCTTTCTCAGCCTTTAAGTCACTTGGATATGATGTCCCACAGTTAGCTCCACCCATATCCACTGTTGCACGTGATTCTTTGAGGAAAGAAGTTGGAAGTTCCTCTGGAAGTGACACAGCTGACACTAGTCATAGCTTTGTTGATGCAAATCACATTGAGAATTCTAATATTAATATAGTTGCTTTAGAAAAAGAAAAGGATTTTATTAAGTCATCCTACAATGGTACTGTAGCTTCTGTAGAAGGAAAATCAGATAGTGTGAAGCCATGTAGTTTGTCTACTGTTCCAGTTGTAGTACCTACAACAAATGAGCTCAGTACGACTCTTGGTTCTACCAAAATTCCTGATGTTACCGCCCTCTCTGTTCAGTTACAGAAAGAAAATTTTAAGTCCAGTATATATGATGGATGCCATGCTCATGGTACAGGGGAACAAGATCATAAGGGGAATTTGGCTAGTGGAAACATGGATAGTTCTAGCCGGAAAGGACCCATTAATGCAGTTAGTAGTCCTGGCGGGCTTGATTCATTTTTAGATCAATGGGATACAGTACCAGAGTTCTACTTTGATATCCATTACATAAAACGGTTGGAATTGCACTCTGCTGCCCCTTTTGAAATACATGGGATTGCCATCTGTTGGGAAAACTCTCCCATGTACTACATTAATCTTCCCAGGGATATTCTGTTGTCTGACAATAGAAAAGACGATGGGTTTTCCTTGAGTGCATGCAGCTATAAGCAGAAAGGTTCATCATCTAATTCTAAGCAAGATTTTATAAATGCCATGAATAGATGGAGCAGGATTTGCAAAATAATGGAGAAAAAAAATGTGAGAAAGTTCACATGGAATTTGAAGGTTCAGATTCAGGTGCTAAAAAAGCCTTCAGTTTCAACTCAGAGGTTTGGTTCCTTGGACACACTTGATAAAAATATGGACCTTGAAGTTGTAGACAATTCTTACTTACTGTTGCCCCCAATCCATGTTAAAGATGCAATTGACATGTGCATTGTGGCTTGGATTCTTTGGCCTGATGAAGAGAGCAGCTCTAGTCCAAACCTGGATAAGGAGGTAAAAAAAAGGTTATCCCCTGAGGACGCAGCAGCAGCTAATCAGTGTGGCAGGTGGAGGAATCAGATGCGAAAAGCTGCTCATAATGGCTGCTGCCGCCGGGTTGCTCAAACCCGAGCATTATGTTCTGTTCTTTGGAAATTGCTTGTTTCTGAGAAACTTGTAGAAGCACTTATGGAAATAGAAATCCCATTGGTGAAAGTTCTTGCTGACATGGAGCTTTGGGGAATCGGTGTTGATTTGGAGAGATGCATTCAGGCTCGCAAATTGTTGGTGAAAAGGCTGAAGCAACTTGAAAAGGAAGCTTACAAACTGGCTGGAATGACGTTTTCATTGAATATGCCAGCAGATATTGCAAAGGTGCTGTTTGAACACTTGAAGCTGCCCATACCCGATGGGAAAAATAAGGGAAAAAACCATCCAAGTACTGGCAAACACTGTTTGGATGCACTAAGGAATGAACATCCCATTGTTCCAATCATCAAAGAACACCGGACATTGGCAAAGCTCCTGAACTCTACACTAGGATCGATTTGTTCTCTGGCTAGGCTATCTGTAAGCACACAGAAGTACACATTACATGGTCGCTGGCTTCAGACATCCACAGCAACTGGACGGCTTTCAATCGAGGAACCTAATCTTCAGTGTGTTGAGCATGCAGTGGACTTCAAGATGAAAGGAGACAAAAATGGGGGCGATGCTGATGAGAATTGTAGAGTCAATGCCCGTGACTTCTTTGTTCCTACTCAGGATAATTGGTTACTGTTAACAGCAGATTATTCTCAGATAGAATTGAGGCTGATGGCACATTTCTCTAAAGATTCTTCACTTATAGAACTTCTTAGTAAGCCTGACGGCGATGTCTTCACAATGATAGCAGCAAGATGGATTGGGTGTTCAGAGGTTTCTGTGGGTTCTCAGCAGAGAGAGCAGACCAAAAAGATGGTGTATGGCATTCTTTATGGTATGGGTCCAAACAGCCTTGCAGAACAAATGGATTGTACTTCCGATGAAGCTTCTGAAAGGATTAGTAACTTCAAAAGCACTTTTCCTGGTGTTGCTTCTTGGCTTCATGAAGCTGTTGCATTTTGTCGGAGTAAAGGATATGTGGTGACTCTCAAGGGAAGGAAAAGGTTTTTGTCAAAAATAAAATTCGGCAGCAGTACAGAAAAATCAAAAGCTCAAAGGCAAGCTGTCAATTCCATTTGTCAGGGATCTGCTGCCGACATAATTAAAATTGCAATGGTTAAAATCTACTCTGAAATTGTTACTGGAGTTGATAGCCTGGATTTAAGTTCTTCATTCACAACCAAGTTCCATATGCTTAGAGATCGTTGCCGGATTCTGTTACAGGTACATGATGAATTAGTGCTGGAAGTTGACCCCTCTGTGATGAAAGAAGCCGCACTTCTGTTGCAGACCAGCATGGAGAATGCAGTCTCACTTCTTGTTCCCCTGAATGTCAAATTAAAGGTTGGAAGAACATGGGGGTCTTTGGAACCATTTGCACCTGATAAATTCAACGTTGACACTCCCATGGCTGAATCCTGA 6417 0.4158 MSSSPRNRLNQFYTTKKRKAISPVTKLRRIEKGAKIVADGSPSAKGSLVNYLVPSQGETDEDPVRPDLVRRKLGLDIGNSVDNGLDKHPLSLAREVQRSYATCGGIENEVSVVDDSVQEKNLSDFEHDGEKSELKQFKAELFSLYCGELHPGISSPLDKGVKGHKRHDSLTVVEEDSSSMVQKCDDTSEPHFGRENISSDKIYNTMKSVPVCSAKVSSGGDTNAFDTGFRKCSNTPTSMNMAECKTPGSLIVKACVKGTPKSTRGSSMFSPGEAFWEEAIQLADGLVVPMGNDSSKVMEESNVMGGQVEMKNSCNLQNYDGKARKILDQSKTIGLTEMHTKDSIKEASSLPVKHFDFSYEDNNMDENTLQNCRVDNLVNVTCVAGKQYESISVASHTYEQTYKVQEKILADSSGNRVRKDNFFNITSNNFNSPNNEARKTIIPASLEAKTPSSHVSLDDQLDLHSWLPPEICNIYRKKGISKLYNWQVDCLRVDGVLQRRNLVYCASTSAGKSFVAEILMLRRVITTGKMAILVLPYVSICAEKAEHLEKLLEPLGKHVRSYYGNQGGGTLPKDTSVAVCTIEKANSLINRLLEEGRLSEMGIIVIDELHMVGDPRRGYLLELMLTKLRYAAGEGISKSSDGESSGGSSDRTDPAQGLQIVGMSATMPNVAAVADWLQAALYQTEFRPVPLEEYIKVGNSIYNKSMELSRTMPKGADLGGKDPDHVVELCNEIVQEGQSVLIFCSSRKGCESTARHVAKFLKSFTVDINENNCEFADITSAISSLRKCPAGLDPIFEETLPAGVAFHHAGLTVEEREIIETCYRKGLLRVLTATSTLAAGVNLPARRVIFRQPRIGCDFIDGTRYMQMAGRAGRTGIDTKGESVLICKPEELKKIMGLLNESCPPLHSCLSEDLNGMTHAILEVVAGGIVQTANDINRYVRCTLLNSTRPFLDVVKSAQESLRWLCQRKFLEWSEDTKLYSTTPLGRASFGSSLCPEESLIVLADLSRAREGFVLASDLHLVYLVTPINVDVEPDWELYYERFVKLSPLDQSVGNRVGVTEPFLMRMAHGGPMGSNKTRWLPNKRKSQHGISSGTVNSDDQTLRVCRRFYVALILSHLVQEIPVGEVCEAFKVARGMVQGLQENAGRFASMVTVFCERLGWHDLEGLVSKFQNRVSFGVRAEVVELTTIPFVKGSRARALYKAGLRTPLAIAEASIPEIVKALFESSSWATEGSAQRSLQFGVAKKIKNGARKIVLDKAEEARVAAFSAFKSLGYDVPQLAPPISTVARDSLRKEVGSSSGSDTADTSHSFVDANHIENSNINIVALEKEKDFIKSSYNGTVASVEGKSDSVKPCSLSTVPVVVPTTNELSTTLGSTKIPDVTALSVQLQKENFKSSIYDGCHAHGTGEQDHKGNLASGNMDSSSRKGPINAVSSPGGLDSFLDQWDTVPEFYFDIHYIKRLELHSAAPFEIHGIAICWENSPMYYINLPRDILLSDNRKDDGFSLSACSYKQKGSSSNSKQDFINAMNRWSRICKIMEKKNVRKFTWNLKVQIQVLKKPSVSTQRFGSLDTLDKNMDLEVVDNSYLLLPPIHVKDAIDMCIVAWILWPDEESSSSPNLDKEVKKRLSPEDAAAANQCGRWRNQMRKAAHNGCCRRVAQTRALCSVLWKLLVSEKLVEALMEIEIPLVKVLADMELWGIGVDLERCIQARKLLVKRLKQLEKEAYKLAGMTFSLNMPADIAKVLFEHLKLPIPDGKNKGKNHPSTGKHCLDALRNEHPIVPIIKEHRTLAKLLNSTLGSICSLARLSVSTQKYTLHGRWLQTSTATGRLSIEEPNLQCVEHAVDFKMKGDKNGGDADENCRVNARDFFVPTQDNWLLLTADYSQIELRLMAHFSKDSSLIELLSKPDGDVFTMIAARWIGCSEVSVGSQQREQTKKMVYGILYGMGPNSLAEQMDCTSDEASERISNFKSTFPGVASWLHEAVAFCRSKGYVVTLKGRKRFLSKIKFGSSTEKSKAQRQAVNSICQGSAADIIKIAMVKIYSEIVTGVDSLDLSSSFTTKFHMLRDRCRILLQVHDELVLEVDPSVMKEAALLLQTSMENAVSLLVPLNVKLKVGRTWGSLEPFAPDKFNVDTPMAES* 2139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3258 2138 SMART helicmild6 794 876 IPR001650 -
Tpr1g3258 2138 Gene3D - 697 896 IPR027417 -
Tpr1g3258 2138 MobiDBLite consensus disorder prediction 1413 1428 - -
Tpr1g3258 2138 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 725 925 IPR001650 -
Tpr1g3258 2138 Gene3D - 466 688 IPR027417 -
Tpr1g3258 2138 CDD DEXHc_POLQ-like 467 688 - -
Tpr1g3258 2138 Pfam Helix-turn-helix domain 881 972 IPR046931 -
Tpr1g3258 2138 SMART polaultra3 1864 2086 IPR001098 GO:0003677|GO:0003887|GO:0006260
Tpr1g3258 2138 Pfam DEAD/DEAH box helicase 496 669 IPR011545 GO:0003676|GO:0005524
Tpr1g3258 2138 Coils Coil 1703 1723 - -
Tpr1g3258 2138 Gene3D - 1824 2118 - -
Tpr1g3258 2138 CDD DNA_pol_A_theta 1698 2121 - -
Tpr1g3258 2138 PANTHER DNA POLYMERASE THETA 483 2126 - -
Tpr1g3258 2138 PANTHER DNA POLYMERASE I 483 2126 IPR002298 GO:0003887|GO:0006261
Tpr1g3258 2138 SUPERFAMILY Ribonuclease H-like 1431 1695 IPR012337 -
Tpr1g3258 2138 PRINTS DNA-polymerase family A (pol I) signature 1815 1837 IPR002298 GO:0003887|GO:0006261
Tpr1g3258 2138 PRINTS DNA-polymerase family A (pol I) signature 1931 1956 IPR002298 GO:0003887|GO:0006261
Tpr1g3258 2138 PRINTS DNA-polymerase family A (pol I) signature 1968 1979 IPR002298 GO:0003887|GO:0006261
Tpr1g3258 2138 PRINTS DNA-polymerase family A (pol I) signature 1990 2001 IPR002298 GO:0003887|GO:0006261
Tpr1g3258 2138 PRINTS DNA-polymerase family A (pol I) signature 2069 2082 IPR002298 GO:0003887|GO:0006261
Tpr1g3258 2138 Gene3D - 1431 1695 IPR036397 GO:0003676
Tpr1g3258 2138 SUPERFAMILY DNA/RNA polymerases 1676 2121 IPR043502 -
Tpr1g3258 2138 CDD SF2_C_Ski2 687 888 - -
Tpr1g3258 2138 MobiDBLite consensus disorder prediction 1292 1311 - -
Tpr1g3258 2138 Gene3D - 1885 2029 - -
Tpr1g3258 2138 Pfam Helicase conserved C-terminal domain 726 876 IPR001650 -
Tpr1g3258 2138 Pfam DNA polymerase family A 1705 2119 IPR001098 GO:0003677|GO:0003887|GO:0006260
Tpr1g3258 2138 SUPERFAMILY Sec63 N-terminal domain-like 1099 1216 - -
Tpr1g3258 2138 MobiDBLite consensus disorder prediction 1409 1428 - -
Tpr1g3258 2138 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 493 685 IPR014001 -
Tpr1g3258 2138 SMART ultradead3 479 698 IPR014001 -
Tpr1g3258 2138 Gene3D - 1074 1202 - -
Tpr1g3258 2138 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 496 890 IPR027417 -
Tpr1g3258 2138 Gene3D Taq DNA Polymerase; Chain T, domain 4 1698 1807 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3258 Tpr-Chr1 36990383 37005012 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3258 K02349 - gmx:100813857 3233.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3258 1 36990383 37005012 Tpr1g3258 1 36990383 37005012 ECH