Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3203 ATGGGTCTCTGTTTTGGTTTTAAACTAAACCCAAAATTCAGTTATACTGTCCCAATTCACTCTCCTCATCTCTTCCTCTCTTCTTCATCTTCTGCTGGAGGCAGAGAAGTTTTTTTCAGCCCAACGAGGTTATCTTTCCTTTCAACAATTTATGAGGAAGGAGAAACTTTGCATAAGGATTTTGGAAAGACGTTTGCATTTTCGCCAACAGCATTGGAAGCACCGCAAAAGGATATATTGCAAGGCGGAGAAGTAACAAAGGTAAATAAAGGAAAGAGGTCGCTTAGTAGTGTGCATGAAATGATTGATAACACGCAATTGCCTTTCGGGGAGTCACATTTCGGTTTGTTAATGGAGAACCTTGATGCTTTAGAAGAAACGTTTGCGGATTCTGAAGCATTAAGGTTGAAAAAGAATATTATATTGCAACTAGAAAAGCTTGGAGCTCTTGAGTTGTTCAATGTTTGTCTAACAGCATCTTCCGGAACCTCACCCGCATCGACATGCACTGACGGAGTTCTTGAACAACTTGAATTAAATAAGAGAAACCACAAAGTAGATGACTATACCGGTAAAGTTGTTGTCCAATCTAGCAAGAGGAAAGAAAATAGAACAAGAAGAAAGAGAGCATCGGTTTCCATAGCACCTTCCTCTAAGTCCTTGCCTTTAGAAATTAATCAAGAAGATCCGTTACGTTCTTCGCCGGCGGCTTCTTTTGTAAAAAGATCATCAAATACTAAAAATACTAAAAATAGAAGAGCAATGATTGCTCAAAGGGAGGTGGAAATGGCAAAAGGTGTAAAGGTTTTAGCAGAGTTAGAGAAAATGAGAACAGCTATAGAAGAGGATACCAAACAAGCGGTAAGCATGAGTAGTTGGGCAGAAGCATCTGGAGTCAATCAGAAAGCGCTAAAACAACAACTGTATCATGGCTATTATTGTAAAGATGAGTTGTTACGGAGTACTCGTTCCTTAGTTCTATACTTTGCCAAAAAGTACAGGGGCATGGGAATAGCTTTGGAAGATTTGCTTCAGGTAGGATATATAGGTGTTCTCCAAGGAGCAGAGCGATTTGACAGTACAAGGGGATACCGATTCTCAACCTATGTGCAGCACTGGATAAGAAAATCAATGTCAAAAACGGTGGCAAAATATGCTCGGGGAATCACTGTTCCTTGGTCAATGAACAAGGCAATAAATCAGATCAAGAAAGCACGAAAAGTCTTGAGAAGTACGTCTATGAAATACCCCGAAGATCATGAAATTGCAAAGATGACAGGTCTTTCGCTGGATAGAATCATATCAGCTAGCCATTGTCTGAGAACAGTTTCTTCAATGAATTGTGGCGTAGAATATCCGGGTTATATACCAGATATGTCGATAGAGAGTCCTGAAAAGACTGTGATGAAACAGCACATTAGAAAAGATATACATGATGTCCTCCAATGTTTGGATTCAAGAGAGAGGCAAATACTAATCCTACGTTTCGGCCTTAATGATCACAAACCTAAGTCTCTTGAATATATAGGGAGGATTTACAAAGTTAGCAAAGCATGGATATGGCAAATAGAGAAAAAAGCTCTTACAAAATTATGGAATGAAACAAATATCTCAAAGATGAATTATTATTTGGATCTGTAG 1641 0.3888 MGLCFGFKLNPKFSYTVPIHSPHLFLSSSSSAGGREVFFSPTRLSFLSTIYEEGETLHKDFGKTFAFSPTALEAPQKDILQGGEVTKVNKGKRSLSSVHEMIDNTQLPFGESHFGLLMENLDALEETFADSEALRLKKNIILQLEKLGALELFNVCLTASSGTSPASTCTDGVLEQLELNKRNHKVDDYTGKVVVQSSKRKENRTRRKRASVSIAPSSKSLPLEINQEDPLRSSPAASFVKRSSNTKNTKNRRAMIAQREVEMAKGVKVLAELEKMRTAIEEDTKQAVSMSSWAEASGVNQKALKQQLYHGYYCKDELLRSTRSLVLYFAKKYRGMGIALEDLLQVGYIGVLQGAERFDSTRGYRFSTYVQHWIRKSMSKTVAKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRTVSSMNCGVEYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFGLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLDL* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3203 546 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 449 532 IPR013324 -
Tpr1g3203 546 Pfam Sigma-70, region 4 480 531 IPR007630 GO:0003700|GO:0006352|GO:0006355
Tpr1g3203 546 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 316 531 IPR014284 GO:0003700|GO:0006352|GO:0006355
Tpr1g3203 546 MobiDBLite consensus disorder prediction 223 250 - -
Tpr1g3203 546 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 257 387 IPR013325 GO:0003700|GO:0006352|GO:0006355
Tpr1g3203 546 PRINTS Major sigma-70 factor signature 342 355 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tpr1g3203 546 PRINTS Major sigma-70 factor signature 366 374 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tpr1g3203 546 PRINTS Major sigma-70 factor signature 484 496 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tpr1g3203 546 PRINTS Major sigma-70 factor signature 505 520 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tpr1g3203 546 PRINTS Major sigma-70 factor signature 520 531 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tpr1g3203 546 MobiDBLite consensus disorder prediction 231 250 - -
Tpr1g3203 546 MobiDBLite consensus disorder prediction 196 215 - -
Tpr1g3203 546 Gene3D - 462 541 IPR036388 -
Tpr1g3203 546 Gene3D - 224 387 - -
Tpr1g3203 546 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 21 545 - -
Tpr1g3203 546 PANTHER RNA POLYMERASE SIGMA FACTOR SIGC 21 545 - -
Tpr1g3203 546 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 391 447 IPR013324 -
Tpr1g3203 546 Pfam Sigma-70 region 2 318 384 IPR007627 GO:0003700|GO:0006352|GO:0006355
Tpr1g3203 546 CDD Sigma70_r4 474 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3203 Tpr-Chr1 36456586 36461331 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3203 K03093 - gmx:100802522 658.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3203 1 36456586 36461331 Tpr1g3203 1 36456586 36461331 ECH