Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3200 ATGCTTCCCCATTTCTCAAACCTTCTCCGCCACACTCATTCCATCAACTCCATCATGCCACGCGCCATCACGTGCCTCCATCAACTCCATTCCTATTCCATATTCAACAACAACAACGCCGCCGGCGTCCCTTTCTGTAACCCTCCTCGTCGTGTCTCTTTTGCGCTTTTTGATCGCAGCGTCAAGAGCCACCAGCCACAACCGTTTAGGGGAGTCCGTGCCAGCGGCGGAGGAGGAGGAGGAGGAGGAGGAAAGAGGGAGTATCGTAAAGTAAGAAGTCGAACGCCAAAGCGCAAGAAGAAAGAGTTGGAATTCTCCGTTCCCATTTGCATCGAAGAAAGTTTGCCAGATGATCCTGAAATCTTGAATATTGCAGAGATGCTTCGTCTAAATGTTCCAATGGCAATGAAACTGGCATTTGATGGTTTGAAAGGTTCAGAGTATAAAACAAGAGATACTTCTATAAAGGATGTTGGCGGGTTTGAAAGTGTTGAGTTATCCGTGCTTCTTTGCAATGATGAGTTTATGCGAAGTCTTAACAAGGAATGGAGAGGTGAAGATCACGCTACTGATGTTCTCTCAATGTCACACCATGTGTCTGAAGTCGATCTTCCTATTCTTATGTTTGGTGATATTGTAATTTCTGTTGAGACAGCGGCAAGACAAGCTGAGGAAAGAGGGCACACACTTCTTGATGAGATCCGTATCCTCATGGTCCATGGATTGTTACATCTTTTGGGATTTGATCATGAATTAAGCGAAGAGGCTGAAGTAGAAATGGAGAAAGAAGAGGAACTCCTTTTGAGGAGTCTTGGTTGGAAAGGAAAAGGGCTAATAAAGAGTGCATATGATGATGCTGAAACAAATTCAAAATCTAGCCAAAAAAGTTCAGATGACAGGAAGAAAGAAGGCAGTCTTAGATTTTACAAACCGAAGTACAACTATATCTTCTGTGATATGGATGGAACATTGCTGAACAGCAAAAGTCAAATTTCTACTTCAACTGCCAAGGCTTTGAGAGAGGCCTCAGCAAGGGGTGTGAAAATTGTGATAGCCACTGGAAAAGCTCGTCCAGCTGTGATAGATATTTTTAAGATGGTGGATTTAGCTGGAAAAGATGGCATTGTTTCAGAATTCTCTCCTGGGGTTTTCTTACAGGGATTGCTTGTTTATGGTAGACAAGGTCAAGAAATATATAGGAGCAGCTTAGATCCAAACGTCTGTAGAGAGGCATGTCTTTACTCTTTGGAGAGTAAGGTTCCACTTATTGCATTTTGTGAAGGTCGCTGCTTAACCCTTTTTAATGACCCACTTGTTGATTCACTTCATACAATATACCATGAGCCAAAGGCTGAGATCATGCCTTCTGTTGAACATCTTCTGGCTTCTGCAGACATACAGAAAATGATTTTCTTAGGCACTGCCCAGAGTGTGGCGGATACGTTACGTCCATACTGGTCAGATGCAACACAAGGTCGTGCCACTGTTGTTCAAGCTGTGCCAGACATGCTGGAAATTGTACCCTTGGGAACATGTAAAGGGAATGGAGTAAAACTGCTGCTTGATCACTTGGGAGTTACTGATGATGAGCAGATAATGGCTATTGGTGATGGGGAAAATGATGTAGAGATGCTTCAGCTAGCTTCTTTAGGTGTTGCACTCAGCAATGGATCAAAGAAGACCAAAGATGTGGCTAATGTGATTGGTTTAAGCAACGATGAAGATGGTGCAGCCGACGCCATCTATCGATATGCATTCTGA 1761 0.4355 MLPHFSNLLRHTHSINSIMPRAITCLHQLHSYSIFNNNNAAGVPFCNPPRRVSFALFDRSVKSHQPQPFRGVRASGGGGGGGGGKREYRKVRSRTPKRKKKELEFSVPICIEESLPDDPEILNIAEMLRLNVPMAMKLAFDGLKGSEYKTRDTSIKDVGGFESVELSVLLCNDEFMRSLNKEWRGEDHATDVLSMSHHVSEVDLPILMFGDIVISVETAARQAEERGHTLLDEIRILMVHGLLHLLGFDHELSEEAEVEMEKEEELLLRSLGWKGKGLIKSAYDDAETNSKSSQKSSDDRKKEGSLRFYKPKYNYIFCDMDGTLLNSKSQISTSTAKALREASARGVKIVIATGKARPAVIDIFKMVDLAGKDGIVSEFSPGVFLQGLLVYGRQGQEIYRSSLDPNVCREACLYSLESKVPLIAFCEGRCLTLFNDPLVDSLHTIYHEPKAEIMPSVEHLLASADIQKMIFLGTAQSVADTLRPYWSDATQGRATVVQAVPDMLEIVPLGTCKGNGVKLLLDHLGVTDDEQIMAIGDGENDVEMLQLASLGVALSNGSKKTKDVANVIGLSNDEDGAADAIYRYAF* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3200 586 ProSitePatterns Uncharacterized protein family UPF0054 signature. 240 250 IPR020549 -
Tpr1g3200 586 PANTHER ENDORIBONUCLEASE YBEY, CHLOROPLASTIC 41 586 - -
Tpr1g3200 586 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 158 277 - -
Tpr1g3200 586 PANTHER ENDORIBONUCLEASE YBEY, CHLOROPLASTIC 41 586 IPR002036 GO:0004222|GO:0006364
Tpr1g3200 586 MobiDBLite consensus disorder prediction 67 95 - -
Tpr1g3200 586 Pfam haloacid dehalogenase-like hydrolase 316 581 - -
Tpr1g3200 586 Gene3D Metalloproteases ("zincins"), catalytic domain 140 272 IPR023091 GO:0004222
Tpr1g3200 586 MobiDBLite consensus disorder prediction 284 303 - -
Tpr1g3200 586 ProSitePatterns Hypothetical cof family signature 2. 535 557 - -
Tpr1g3200 586 SUPERFAMILY HAD-like 308 584 IPR036412 -
Tpr1g3200 586 Gene3D - 316 581 IPR023214 -
Tpr1g3200 586 Hamap Endoribonuclease YbeY [ybeY]. 106 275 IPR002036 GO:0004222|GO:0006364
Tpr1g3200 586 SFLD Haloacid Dehalogenase 316 585 - -
Tpr1g3200 586 Pfam Endoribonuclease YbeY 161 270 IPR002036 GO:0004222|GO:0006364
Tpr1g3200 586 TIGRFAM TIGR00043: rRNA maturation RNase YbeY 165 271 IPR002036 GO:0004222|GO:0006364
Tpr1g3200 586 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 315 553 IPR006379 -
Tpr1g3200 586 SFLD C2.B: Phosphomannomutase and Phosphatase Like 316 585 - -
Tpr1g3200 586 ProSitePatterns Hypothetical cof family signature 1. 315 326 - -
Tpr1g3200 586 TIGRFAM Cof-subfamily: Cof-like hydrolase 315 581 IPR000150 GO:0016787
Tpr1g3200 586 Gene3D - 402 509 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3200 - - gmx:100810101 834.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3200 1 36441152 36449478 Tpr1g3200 1 36441152 36449478 ECH