Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3174 ATGGCGATTCCTTCTCTCGACGAAGAAACCACCAAGAAAGTCATAAGACAGGTTGAGTTCTATTTCAGCGATAGCAATCTTCCTAGAGATGATTTCTTGCGTAAAACTGTTACTGAAAGTCAAGATGGAATGGTTAGTTTGGCTTTGATTTGTTCTTTTAATCGGATGCGAAAGCATCTTAATTTGGGAGAGATTAAGCCCGATGAAGTCAAGGAAGAAACTGTCAAAGCTGTTGCTGAAGTTTTGAAAAATGCTGCTACACTCAAGCTCTCAGAAGATGGGAGCAAAGTTGGAAGGAATACTGAACTTTCCAAGCCAGAAGTGGTTATTGAGCAGGTTGAGATAAGAACAATTGCTGCATCACCATTTGAATATACTGTGAAGCTTGAAGAAGTAGAGTCATTCTTTGGGCAATATGCGAAGGTCAACAGTGTGCGGTTGCCCCGTCATGTTGGAGACAAAAAATTCTTCTGTGGTACTGCCCTTGTTGAGTTCTCATCAGAGGAAGAAATGGAAAAAGTTTTGAAGCAAAAATTGGTGTATGCGGGTGCTGAGCTAGAATTAAAACCAAAGAAGGACTTTGATGCAGAAAGAGAAAAAGAATTGGAAAAACATGCAAAGTATCATAAACCTGCGGATTCAAACCATGAAGATAACACAAATTCAGAAGAAGACTACCCTAAAGGCTTACTTATAGCCTTCAAACTAAAGAGCAGTTCCGATGAAGTTCCTGCAGAAAAGAATTGCACTGAAAAACAAGCCAATGGAAATAATGGTGTCACCAAGACAGATGAACAAAAGCCCGCTGAAGTTGCTGCGAAGTCCGAAGATAATGACAATGATAAAGAAAACAATGGTGGGAATGAAGCAAAGGAGGCTGAAGGCGAAGAAAAGGAAAAAGAAAACAATGGGGTGAAAGAAGTAAAGGAGGCTGACGTTGAAGAAAAGGGCCAAGAAAACAATGGGGTTAATGAAGGAAAGGCTGCTGAAGCTGAAGAAAAGAAGGGTCAGGAGACTGAAAAAAAAACAGCTGCTTCTTACAAGAGCGACTCTGATGTTGTCTTACGTGAGGATTTGAAGGTTGTCTTTCAGAAGTTTGGTGATGTTAAGTACATAGATTTCAATATGGGAGATGAGTCAGGATTCATTCGGTTTGATGAACCTGAAGCCGCTCAGAAAGCACGTACTGCTGCAGTTATTTCTGAAATCGGGGGATTGGCTGTGAAGAATTTTATTGCTATTCTAGATCCAGTGACCGGTGAGGCTGAAAAAGAATACTGGAGCAAGCTTCGTGGTAAGCAAGATCAGCGCAGAGAAAGCTTTAGTAACCGAGGAAGGGGAGGAAGGCATGGTAGAGGAGGGAAAAATTTCCGGCATAGAGATAATGATTCTGGAGGAGGTCGCCCAAATAAATTTAGAAAATTTATGCAAAGGGGTTAG 1440 0.4111 MAIPSLDEETTKKVIRQVEFYFSDSNLPRDDFLRKTVTESQDGMVSLALICSFNRMRKHLNLGEIKPDEVKEETVKAVAEVLKNAATLKLSEDGSKVGRNTELSKPEVVIEQVEIRTIAASPFEYTVKLEEVESFFGQYAKVNSVRLPRHVGDKKFFCGTALVEFSSEEEMEKVLKQKLVYAGAELELKPKKDFDAEREKELEKHAKYHKPADSNHEDNTNSEEDYPKGLLIAFKLKSSSDEVPAEKNCTEKQANGNNGVTKTDEQKPAEVAAKSEDNDNDKENNGGNEAKEAEGEEKEKENNGVKEVKEADVEEKGQENNGVNEGKAAEAEEKKGQETEKKTAASYKSDSDVVLREDLKVVFQKFGDVKYIDFNMGDESGFIRFDEPEAAQKARTAAVISEIGGLAVKNFIAILDPVTGEAEKEYWSKLRGKQDQRRESFSNRGRGGRHGRGGKNFRHRDNDSGGGRPNKFRKFMQRG* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3174 479 SUPERFAMILY RNA-binding domain, RBD 109 193 IPR035979 GO:0003676
Tpr1g3174 479 Gene3D - 107 207 IPR012677 -
Tpr1g3174 479 MobiDBLite consensus disorder prediction 250 264 - -
Tpr1g3174 479 CDD LA_like_plant 10 99 - -
Tpr1g3174 479 ProSiteProfiles La-type HTH domain profile. 4 107 IPR006630 -
Tpr1g3174 479 SUPERFAMILY "Winged helix" DNA-binding domain 6 102 IPR036390 -
Tpr1g3174 479 MobiDBLite consensus disorder prediction 427 479 - -
Tpr1g3174 479 ProSiteProfiles xRRM domain profile. 338 463 IPR014886 GO:0003723
Tpr1g3174 479 Pfam La domain 14 84 IPR006630 -
Tpr1g3174 479 PANTHER OS02G0610400 PROTEIN 4 465 - -
Tpr1g3174 479 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Tpr1g3174 479 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Tpr1g3174 479 PRINTS Lupus La protein signature 157 175 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Tpr1g3174 479 PANTHER LUPUS LA PROTEIN-RELATED 4 465 IPR045180 -
Tpr1g3174 479 Gene3D - 6 106 IPR036388 -
Tpr1g3174 479 MobiDBLite consensus disorder prediction 243 351 - -
Tpr1g3174 479 MobiDBLite consensus disorder prediction 427 446 - -
Tpr1g3174 479 SMART rrm1_1 351 409 IPR000504 GO:0003723
Tpr1g3174 479 SMART rrm1_1 117 189 IPR000504 GO:0003723
Tpr1g3174 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 177 IPR000504 GO:0003723
Tpr1g3174 479 SUPERFAMILY RNA-binding domain, RBD 356 445 IPR035979 GO:0003676
Tpr1g3174 479 SMART la 8 100 IPR006630 -
Tpr1g3174 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 201 IPR000504 GO:0003723
Tpr1g3174 479 MobiDBLite consensus disorder prediction 197 224 - -
Tpr1g3174 479 CDD RRM2_La_like 346 415 - -
Tpr1g3174 479 Pfam RNA binding motif 354 446 IPR014886 GO:0003723
Tpr1g3174 479 MobiDBLite consensus disorder prediction 267 351 - -
Tpr1g3174 479 CDD RRM1_La 117 189 - -
Tpr1g3174 479 Gene3D - 326 446 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3174 Tpr-Chr1 36209314 36216829 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3174 K11090 - gmx:100803099 539.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3174 1 36209314 36216829 Tpr1g3174 1 36209314 36216829 ECH