Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3108 ATGCTTCTACATTTCAAATCATTTCTGTTGTCATCGTCACGAAGAGGAATCACAAGGAAAGTTTGTTCTGTACGAACCATGTGTTCGTACCGAGAGGATCTAGAAATGAAAGATTTACTTGACTACATTGATTCGTTGAAAAATTACGAGAAATCAGGGGTTCCCACAGGGGCAGGCACTGATTCTCACGACGGGTTTGATCTTGGTAGAATGAGACGCCTAATGGATCGATTTGGGAATCCTCATTCCAAATTTAAGGCTGTTCATATTGCTGGGACAAAGGGAAAAGGATCAACAGCTGCTTTTATATCTAATATTCTGAGGACTGAAGGTTATTCTGTTGGTTGTTATACTAGTCCACATATCCAGACTATCAGGGAACGCATTCTGCTAGGAAGATCAGGTGATCCTGTTTCGGCGAAATTGCTGAACAGTCTCTTTCATAGGATCAAGCAGGATCTTGACCAAGCAGTGAAAGCAGAAAATGGTTGCATAAGCCATTTTGAGGTTTTCACCGCCATGGCATTCATCTTGTTTGCTGATGAGAAAGTTGACATTGCGGTTATTGAGGCTGGGTTAGGAGGTGCACGGGATGCAACAAATATTATATCAAGCTCTGGACTTGCTGCAGCAGTCATAACCACTGTAGGTGAGGAGCATTTGGCAGCTCTTGGGGGTTCGTTGGAAACTATTGCAACGGCAAAGGCTGGAATCATAAAACAAGGTTGCCCATTGGTGTTGGGTGGACCGTTTCTACCTCATATTGAGCACATTATTCGAGACAAAGCAGTTAACATGGACTCCCCTGTGGTGTCGGCATATGACTCTGGCAATAACTTAGCTGTGAAAAGTTTCAGCATACTAAATGGCAAGCCTTGCCAAACATGTGATATAGAAATACAAACTGTCAAGGACTTGAGACTGTCCTGTAAGTTACATGATTTGAAGCTGCAAATGCCTGGTGCTCACCAACTTCAAAATGCAGCAACTGCAACTTGTGTGGCACTCTGTCTTCGTAATCTAGGATGGAGAATTTCTGATGATTCTATTAGGCGTGGTTTAGAGCGTACATACCTCCTTGGAAGGAGTCAACTTCTAACATCTGACGAAGCCAAGGTCTTAGGGCTTACTGGAGCAACAATACTGCTTGATGGAGCCCACACCAAAGAATCTGCCAAAGCACTGATGAATACAATAAGGATGGCATTTCCCAAGGCTCGATTAGCTTTTGTTGTTGCAATGGCGTGTGACAAAGACCATGCAGGTTTTGCTAGAGAGATCCTCTCAGGTTCATATGTTGAGACTGTTATTTTGACCGAAGCTGCTATTGCTGGAGCTGTAACTCGAACAACACCAGCTTCTTTGTTGAGAGATTCTTGGATTAAAGCTTCTGAAGAACTTGGCATTAACATTTGTCATGAGGGAATGACAGAATACAGAGAATTATTTAAGGAACAGCCGGCAAGCTCTGAAAGCAATTTGAACGATGGTAAGACCATATTGGCAACTGAGTCTTCTTTAAAGGGTTGCTTGAGAATTGCAAATGAGATTCTAAACAGAAGAAGGGACGAAAAAGGTGTTATCGTTATCACTGGATCACTGCATATTGTATCCTCAGTCTTAGCTTCTCTTGGTGATTAA 1641 0.426 MLLHFKSFLLSSSRRGITRKVCSVRTMCSYREDLEMKDLLDYIDSLKNYEKSGVPTGAGTDSHDGFDLGRMRRLMDRFGNPHSKFKAVHIAGTKGKGSTAAFISNILRTEGYSVGCYTSPHIQTIRERILLGRSGDPVSAKLLNSLFHRIKQDLDQAVKAENGCISHFEVFTAMAFILFADEKVDIAVIEAGLGGARDATNIISSSGLAAAVITTVGEEHLAALGGSLETIATAKAGIIKQGCPLVLGGPFLPHIEHIIRDKAVNMDSPVVSAYDSGNNLAVKSFSILNGKPCQTCDIEIQTVKDLRLSCKLHDLKLQMPGAHQLQNAATATCVALCLRNLGWRISDDSIRRGLERTYLLGRSQLLTSDEAKVLGLTGATILLDGAHTKESAKALMNTIRMAFPKARLAFVVAMACDKDHAGFAREILSGSYVETVILTEAAIAGAVTRTTPASLLRDSWIKASEELGINICHEGMTEYRELFKEQPASSESNLNDGKTILATESSLKGCLRIANEILNRRRDEKGVIVITGSLHIVSSVLASLGD* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3108 546 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 361 545 IPR036615 GO:0009058|GO:0016881
Tpr1g3108 546 ProSitePatterns Folylpolyglutamate synthase signature 2. 188 203 IPR018109 GO:0004326|GO:0005524|GO:0009396
Tpr1g3108 546 SUPERFAMILY MurD-like peptide ligases, catalytic domain 65 358 IPR036565 GO:0005524|GO:0009058
Tpr1g3108 546 ProSitePatterns Folylpolyglutamate synthase signature 1. 88 111 IPR018109 GO:0004326|GO:0005524|GO:0009396
Tpr1g3108 546 TIGRFAM folC: bifunctional protein FolC 68 542 IPR001645 GO:0004326|GO:0005524|GO:0009396
Tpr1g3108 546 Gene3D - 56 359 IPR036565 GO:0005524|GO:0009058
Tpr1g3108 546 Gene3D - 361 546 IPR036615 GO:0009058|GO:0016881
Tpr1g3108 546 PANTHER DIHYDROFOLATE SYNTHETASE-RELATED 33 544 - -
Tpr1g3108 546 PANTHER FOLYLPOLYGLUTAMATE SYNTHASE-RELATED 33 544 IPR001645 GO:0004326|GO:0005524|GO:0009396
Tpr1g3108 546 Pfam Mur ligase middle domain 90 335 IPR013221 GO:0005524|GO:0009058|GO:0016881
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3108 Tpr-Chr1 35570547 35579643 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3108 K20457 - gmx:100816933 855.899