Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3081 ATGGATGCTTCTTCTTCTTCTGCGAGTCACGCTGAATTCGATTACTTGTTTAAGCTTCTTATGATTGGTGATTCTGGAGTTGGCAAAAGCACGCTGCTTCTTCGATTCACTTCTGATACTTTCGAGGATCTTTCTCCTACCATCGGTGTAGACTTCAAAGTTAAATATGTTACACTTGGTGGAAAAAAGTTAAAACTTGCTATTTGGGACACAGCTGGACAGGAAAGGTTCAGAACACTTACCGGTTCATATTATAGAGGTGCACAAGGAATAATTATGGTTTATGATGTAACGCGGCGGGACACCTTTACAAATCTATCTGACATATGGGCTAAAGAAATTGACCTATACTCAACAAATCAAGATTGCATCAAGATGCTTGTAGGAAACAAAGTTGACAAGGAAAGTGAAAGGGTTGTTACCAAAAAGGAAGCGGTGGACTTCGCAAGGCAATATGGATGCCTTTATACTGAATGCAGTGCTAAAACTCGAGTAAATGTTGAACAGTGTTTTGAGGAGCTTGTACTGAAGGTTTTGGATACACCAAGCCTCTTGGCCGAGGGATCATCTGGTGTGAAAAAGAACATCTTCAAGCAGAAACCCCAAGAGTCTGATGCATCATCAACTAGTAGCTGTTGCTAA 642 0.4081 MDASSSSASHAEFDYLFKLLMIGDSGVGKSTLLLRFTSDTFEDLSPTIGVDFKVKYVTLGGKKLKLAIWDTAGQERFRTLTGSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQDCIKMLVGNKVDKESERVVTKKEAVDFARQYGCLYTECSAKTRVNVEQCFEELVLKVLDTPSLLAEGSSGVKKNIFKQKPQESDASSTSSCC* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3081 213 SMART ras_sub_4 14 181 - -
Tpr1g3081 213 Pfam Ras family 18 179 IPR001806 GO:0003924|GO:0005525
Tpr1g3081 213 PANTHER LD21953P-RELATED 8 213 - -
Tpr1g3081 213 ProSiteProfiles small GTPase Rho family profile. 10 179 - -
Tpr1g3081 213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 183 IPR027417 -
Tpr1g3081 213 PANTHER BNAA05G18680D PROTEIN 8 213 - -
Tpr1g3081 213 SMART arf_sub_2 1 182 - -
Tpr1g3081 213 SMART rab_sub_5 17 181 - -
Tpr1g3081 213 SMART ran_sub_2 22 207 - -
Tpr1g3081 213 TIGRFAM small_GTP: small GTP-binding protein domain 15 173 IPR005225 GO:0005525
Tpr1g3081 213 SMART rho_sub_3 19 181 IPR001806 GO:0003924|GO:0005525
Tpr1g3081 213 CDD Rab18 17 178 - -
Tpr1g3081 213 ProSiteProfiles small GTPase Rab1 family profile. 12 213 - -
Tpr1g3081 213 ProSiteProfiles small GTPase Ras family profile. 5 213 IPR001806 GO:0003924|GO:0005525
Tpr1g3081 213 Gene3D - 10 213 IPR027417 -
Tpr1g3081 213 PRINTS Transforming protein P21 ras signature 17 38 - -
Tpr1g3081 213 PRINTS Transforming protein P21 ras signature 39 55 - -
Tpr1g3081 213 PRINTS Transforming protein P21 ras signature 57 79 - -
Tpr1g3081 213 PRINTS Transforming protein P21 ras signature 121 134 - -
Tpr1g3081 213 PRINTS Transforming protein P21 ras signature 156 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3081 Tpr-Chr1 35318462 35324271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3081 18 171 EF-hand Containing Proteins AT5G27540 22.785 1.31e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3081 K07910 - gmx:100794330 386.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3081 1 35318462 35324271 Tpr1g3081 1 35318462 35324271 ECH