Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3080 ATGGTGAAGGAAACTGAGTATTACGATATCCTCGGAGTTTCTCCTTCTGCTACCGATGATCAAATTCGCAAGGCTTATTATCACAAGGCAAAGCAAGTTCATCCTGATCGAAATCAAAATGATCCGAATGCTGCACAAAAGTTCCAGATTTTGGGGGAAGCTTATCAGGTTTTGAGTGATCCGGTACAAAGGAATGGCTATGATCAAAATGGAAAGCATTCTGTATCTAGAGAAACTATGCTTGACCCCATGGCTGTCTTTGCCCTGCTCTTTGGAAGTGAATTGTTTGAGGACTACGTTGGACATCTAGCTGTTGCATCAATGGCTGCTTCTGAAGTAGCTGATGAAAGCGAGGATTTGCAGGAAAAGCTAAAGGCTGTCCAGAAAGAAAGGGAAGAAAAGCTAGCAAGATTTTTGAAAGATTTTCTCGGCCAATATGCCCGTGGTGACCAAAAGGGTTTCTACCAGCGAGCAGAATCTGAAGCAAGACGGCTTTCTCATGCAGCCTTTGGAGTTGACATGTTACATACCATCGGCTATATATACTCAAGACAAGCAGCACAAGAGCTAGGGAAAAAGGCCCTTTATCTTGGAGTGCCATTTCTGGCTGAATGGGTTCGCAATAAAGGACATTTTTGGAAATCACAGTTAACAGCAGCTAAAGGCGCTTTTCAGTTGCTCCAACTTCAAGAAGAACTCAGCAAGCAATTTAAAACGGGTGGTAGTTGCCCTGAAAATGTTGACTCCCATATCCGTCTTAATAAGGATACTCTGTTGAATTCCTTGTGGAAGTTAAATGTAGTGGACATAGAAGTAACTCTTGCACATGTGTGTCAAATGGTGCTAAAGGAAAATAATGTTAGGAGAGAAGAACTTAAAGTTCGAGCTACCGCTCTTAAAATTCTTGGGAAGATATTTCAGGAAAAGAATGCAAAAGGAGAAACACTGAAGAAGAAACTCGCTGTTGATTCTGATGACGAAGGAAGCAGCTCTGATTCATCAGACGATGAATCACACAGATCACTTACCTATCGAACTCCTTTTTTCAATCAGGGTATCGGTAGGCTCTTCAAATGCCTTTGCAATCCAGCATTTGATGTGGATGATGATGAAGAGATAGTTTACAAAGGCAAATGA 1137 0.4169 MVKETEYYDILGVSPSATDDQIRKAYYHKAKQVHPDRNQNDPNAAQKFQILGEAYQVLSDPVQRNGYDQNGKHSVSRETMLDPMAVFALLFGSELFEDYVGHLAVASMAASEVADESEDLQEKLKAVQKEREEKLARFLKDFLGQYARGDQKGFYQRAESEARRLSHAAFGVDMLHTIGYIYSRQAAQELGKKALYLGVPFLAEWVRNKGHFWKSQLTAAKGAFQLLQLQEELSKQFKTGGSCPENVDSHIRLNKDTLLNSLWKLNVVDIEVTLAHVCQMVLKENNVRREELKVRATALKILGKIFQEKNAKGETLKKKLAVDSDDEGSSSDSSDDESHRSLTYRTPFFNQGIGRLFKCLCNPAFDVDDDEEIVYKGK* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3080 378 Pfam X-domain of DnaJ-containing 128 312 IPR026894 -
Tpr1g3080 378 CDD DnaJ 6 60 IPR001623 -
Tpr1g3080 378 ProSiteProfiles dnaJ domain profile. 6 71 IPR001623 -
Tpr1g3080 378 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 361 - -
Tpr1g3080 378 Pfam DnaJ domain 6 68 IPR001623 -
Tpr1g3080 378 PRINTS DnaJ domain signature 8 26 IPR001623 -
Tpr1g3080 378 PRINTS DnaJ domain signature 26 41 IPR001623 -
Tpr1g3080 378 PRINTS DnaJ domain signature 43 63 IPR001623 -
Tpr1g3080 378 PRINTS DnaJ domain signature 63 82 IPR001623 -
Tpr1g3080 378 SUPERFAMILY Chaperone J-domain 2 101 IPR036869 -
Tpr1g3080 378 Coils Coil 110 137 - -
Tpr1g3080 378 Gene3D DnaJ domain 1 85 IPR036869 -
Tpr1g3080 378 SMART dnaj_3 5 63 IPR001623 -
Tpr1g3080 378 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 361 - -
Tpr1g3080 378 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3080 Tpr-Chr1 35312188 35316748 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3080 7 81 Miscellaneous Gene Families AT1G16680 38.961 3.16e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3080 - - gmx:100793811 625.55