Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3066 ATGACTATGGAAAAAGGTGGCAACAATAATCATCAACACCAACCATTTGAAGTTTCCATTGATACTGCTGGTTCTAAGTGCTTTGATGATGATGGCCGTTTAAAAAGAACTGGAAATAAATGGACAGCTAGTGCACACATAATAACAGCAGTGATAGGTTCTGGAGTACTATCACTTGCATGGGCTATAGCCCAACTTGGATGGGTAGCAGGCCCAGCCATGATGATTCTTTTCTCCTTTGTTACTTACTACACCTCCACTCTTCTCTCTGTTTGTTACCGTACTGGTGACCAACTCAATGGAAAAAGAAACTACACTTACACTGATGCTGTTAGAGCATATCTTGGTGGCTTTAAGGTCAAGATTTGTGGAGTTGTTCAATATGCTAATCTTTTTGGGGTTGCCATTGGTTACACTATTGCTGCTTCCATAAGCATGATGGCAATCAAAAGGTCTAATTGTTTCCATAGCAGTGGAGGAAAAAATCCATGTCACATGAATGGAAATGTTTACATGATTTCATTTGGTATTGTGGAAATATTATTCTCCCAAATTCCTGACTTTGATCAGTTATGGTGGCTGTCTGCTCTAGCTGCTGTTATGTCCTTCACATACTCAACTATTGGACTTGGCCTTGGTATTGGTAAAGTTATAGAAAACAAGGGCATTAAAGGAAGCCTAACCGGCATAACTGTTGGTACTGTGACAGAAACTCAAAAAGTTTGGAGAAGCTTCCAAGCTCTTGGTAACATAGCTTTTGCTTACTCCTACTCAATGATCCTCATTGAAATTCAGGACACAATCAAGTCCCCTCCATCGGAGTCGAAAACAATGAAGAAAGCTACTTTAATCAGTGTTATAGTCACCACAATTTTCTACATGCTATGTGGTTGTTTCGGATACGCTGCTTTCGGAGACATAAGTCCCGGAAACCTTCTAACCGGTTTCGGTTTCTATAACCCTTTCTGGCTCCTCGATATAGCCAATGCTGCAATAGTCATCCACTTAGTCGGCGCTTACCAAGTTTACTGCCAACCTCTCTACTCAGTAGTCGAGAAAACCGCAGCTGAAAAATTCCCAGATAGCGATTTCGTCAACAAAGACATTGAAATTCCGATCCCATGCGTCGCCTCTCCGTTAAAAATCAACCTCTTTAGATTGGTTTGGAGGACAATTTTTGTGATCATTACAACAGTAATATCAATGCTTCTACCATTTTTCAATGACATTGTTGGATTAATCGGAGCCGTTGGATTTTGGCCTCTAACTGTGTATTTTCCAGTGGAAATGTACATTGTTCAAATGAAAATACCAAAATGGAGCACAAAATGGATTTGTTTACACATGCTTAGTGCTGCATGTCTTGTGATTTCTTTAGCTGCTGCAGCTGGTTCTGTTGCTGGTGTTATTGCTGATCTTGGAGTTTATAAGCCATTTCATGCTATGTACTAA 1452 0.4022 MTMEKGGNNNHQHQPFEVSIDTAGSKCFDDDGRLKRTGNKWTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAMMILFSFVTYYTSTLLSVCYRTGDQLNGKRNYTYTDAVRAYLGGFKVKICGVVQYANLFGVAIGYTIAASISMMAIKRSNCFHSSGGKNPCHMNGNVYMISFGIVEILFSQIPDFDQLWWLSALAAVMSFTYSTIGLGLGIGKVIENKGIKGSLTGITVGTVTETQKVWRSFQALGNIAFAYSYSMILIEIQDTIKSPPSESKTMKKATLISVIVTTIFYMLCGCFGYAAFGDISPGNLLTGFGFYNPFWLLDIANAAIVIHLVGAYQVYCQPLYSVVEKTAAEKFPDSDFVNKDIEIPIPCVASPLKINLFRLVWRTIFVIITTVISMLLPFFNDIVGLIGAVGFWPLTVYFPVEMYIVQMKIPKWSTKWICLHMLSAACLVISLAAAAGSVAGVIADLGVYKPFHAMY* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3066 483 PANTHER OS05G0424000 PROTEIN-RELATED 12 477 - -
Tpr1g3066 483 Pfam Transmembrane amino acid transporter protein 37 470 IPR013057 -
Tpr1g3066 483 PANTHER AMINO ACID CARRIER 12 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3066 Tpr-Chr1 35142159 35148935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3066 26 483 Organic Solute Cotransporters AT5G09220 74.891 0.0 744
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3066 K24917 - jre:109009851 790.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3066 1 35142159 35148935 Tpr1g3066 1 35142159 35148935 ECH
Tpr7g0383 7 3185059 3190453 Tpr1g3066 1 35142159 35148935 PCT